Click here to switch to the map view.

The map label for this gene is 117921228

Identifier: 117921228

GI number: 117921228

Start: 3326079

End: 3328367

Strand: Direct

Name: 117921228

Synonym: Shewana3_2787

Alternate gene names: NA

Gene position: 3326079-3328367 (Clockwise)

Preceding gene: 117921227

Following gene: 117921239

Centisome position: 66.89

GC content: 48.93

Gene sequence:

>2289_bases
ATGATGAAAAACTACAATAAATCTCTACTGGCACTGGCGCTCACCAGCGCCTTGTGTCTAACCGCCTGCGGGGACGGCAA
AGACGGGCAAGATGGTGCACCAGGTACCCCTGGCACACCAGGAACACCCGGCACGCCAGGAACACCCGGACTTCCTGCAG
GCTCATTTGCTAAAACCGCTGACTCCATTACTGATCTGAAATTCACCCTCAGCCCAGCAGACATTAAAGTCACCAGTAGC
GAAGGCTTTAGCGTTAAGTTCAGCTTAACCGGAAAAAGCTCAGGCAAAGATGTGCCCTTTATGGGACTCGACAAAATTGC
CCTCTATTCGTTAACGGCGAATGAAAACACCTCGGGCACGGGCGCTCCCATTGAATGGCAAAACAATGCCATGGCAAACA
ATGCGGGCACCTCTTTAACTTGTACACTCAATGGCCTTAACGGTACTAAAAACGCGTGTACATTAACCGAAGACACTGCA
AATCCAGGCACTTACACTGCCACTTGGACCTATGATGGTGCGGCGCCAATCATCAATCCAAATGACAATCCTAATGCGGT
ACACAGAGTCTTTTTACGCGCTTATAATATCGTCAACGCAGCAGGCGTAGCCTTGTCTGATAAGGTGCTCTCAGTGCCTG
TTGACTTTATCCCTGCAACCGATGAGTTAGCGGCATCAGGTAAAGACACAGTATCGAGCGCGGCTTGTAAAAACTGTCAC
GGTGAAGTGGATGGCCATATCGCGAAGATTGAAGCTCACCATAACTACCAAGACGTTAAAAACTGCGTAACCTGCCACAA
CCCAGACCAAGTGCCAAGTGATGCACAACTTGCTGAAGGTTGGGTATTCGACTTTGCACCTATGATCCACCGCATCCATG
CGGGCGAACATAATGCGGACTATCTGTCTGGCGAAGCTAAAGAATACTTCGGTGAAATTGGTTTCCCATCAGACTTGAAA
GAATGTAAGTCTTGTCACGATGGTGAACCAAGCTATAACACCAATATCTACGCTCAAGCCTGCGTGGGTTGTCATATCAA
TGTCAACTTCGCAACCGGTGAAAACCACTCTGAGTTTGGTTTAGCTCAAGCCGATGACACTCAATGTAAATCCTGTCACG
GTAGCGGCAGCTTAACGCCAGAAGCAGTCCACAGTGTCGGCAAACGTGCTGAATACGCGTCATTAATGACTGTCGATTTT
ACCAGCGCAACACTAGGCACTTCAGCAACCGTGGGCTACCAAACCCTAACCCTGAAAGCCAATGTGACCTTAAATGGTGC
AACCATTGCCGATGGCACTAGCCTGAAAACCTACAATGCCACCAGCAACCCAACAGCGATACTTGCTGCTAACGGTTTGC
TACTGGGTAATGTGGCCACCGATGGCACTGTATACTCATGGCGTGACGTTAAACCTACTGCTGTGAGCCTGAAACTGGAA
AACGGTACCCTGTCAGGTGGCGTATTAACCTTCGTGAAAGATATCCCTGATGCACAAGCAATTGGCACTATCTACGTCGG
TTCTGAAGCCAACTTCTGTGCCAAAGCGGGTAAAGTGGTTAGCTGTAATACTGAAGGACTTGAATATGGTCCAACTAGCC
CTGTAGGTAACACTTCAGCAGTGAAATTCTTTAACTTAAGCGGCGGCACACCTGCAGTAGCCCGTATGAACGACCCTGCT
CGCATCACAGTTGAAGAAGCGAAATGTAACGCATGTCATGGTAGCTTAGACTATGCGAAAGGCTACAGACACGGGGTTTA
CACCTTCGATCAATGTATGAACTGTCACAACGATACTACTGGTGCTTCTGGCCATGGTGCAACAGGCTACAAAGGCGAAG
ATGGCAAGTTAGTTGTGAATCCAGATGTTACCTTTAACAACAAAGACCTATTCACCGTTGCTCACCGTTTCCACAGTGGT
AACTTCGGTGTTGTCGAAGGCATCTTCCGCAATGCAGCAGGCGAATTAGAAGGTTATCCATCACCAGAAACCGCATGTTC
AGCCTGTCACAAAGATGGTGCAACCCTGTTCGCAGCTGACGGTGGTTTAACTTCTGGCAAACGTTCTATCAAAGTGGGCA
GCAACTACATTAGCCCTGTTGCTGAATCATGCCGCACCTGTCACGCTCACTCAGATGCAGCAGCCGTAGCCCACTTTAGA
AGTAACGGTGCGATTGTCGAAGCTGATGCTGTGACCGATCCTAACCTACCAGTAGAATCATGCGCGACCTGCCATGCTGA
AGGTAAAACCTATGGCATAGATAAGGTACACGCAGAGGTAGCACACTAG

Upstream 100 bases:

>100_bases
CATATCAGATACAAACTTATAAATACCACTTTATAAGTAGGTGAATCGACCTATAGTAGAGTCACTGCACACGCAGTCTT
ATAGAAGAAAAAGGGACGCG

Downstream 100 bases:

>100_bases
TACTAGTACCTTCGGGTTGCCCCCTGCACAACCCGAGTCTCCTCTCTGCAACTTATTGGGGCTCCTTCGGAGCCCCTTTT
TTATGTATAGCGATTAATTC

Product: decaheme cytochrome c

Products: NA

Alternate protein names: Decaheme Cytochrome C MtrF; Decaheme C-Type Cytochrome OmcA/MtrC Family; Lipoprotein Cytochrome C; Deca-Heme C-Type Cytochrome

Number of amino acids: Translated: 762; Mature: 762

Protein sequence:

>762_residues
MMKNYNKSLLALALTSALCLTACGDGKDGQDGAPGTPGTPGTPGTPGTPGLPAGSFAKTADSITDLKFTLSPADIKVTSS
EGFSVKFSLTGKSSGKDVPFMGLDKIALYSLTANENTSGTGAPIEWQNNAMANNAGTSLTCTLNGLNGTKNACTLTEDTA
NPGTYTATWTYDGAAPIINPNDNPNAVHRVFLRAYNIVNAAGVALSDKVLSVPVDFIPATDELAASGKDTVSSAACKNCH
GEVDGHIAKIEAHHNYQDVKNCVTCHNPDQVPSDAQLAEGWVFDFAPMIHRIHAGEHNADYLSGEAKEYFGEIGFPSDLK
ECKSCHDGEPSYNTNIYAQACVGCHINVNFATGENHSEFGLAQADDTQCKSCHGSGSLTPEAVHSVGKRAEYASLMTVDF
TSATLGTSATVGYQTLTLKANVTLNGATIADGTSLKTYNATSNPTAILAANGLLLGNVATDGTVYSWRDVKPTAVSLKLE
NGTLSGGVLTFVKDIPDAQAIGTIYVGSEANFCAKAGKVVSCNTEGLEYGPTSPVGNTSAVKFFNLSGGTPAVARMNDPA
RITVEEAKCNACHGSLDYAKGYRHGVYTFDQCMNCHNDTTGASGHGATGYKGEDGKLVVNPDVTFNNKDLFTVAHRFHSG
NFGVVEGIFRNAAGELEGYPSPETACSACHKDGATLFAADGGLTSGKRSIKVGSNYISPVAESCRTCHAHSDAAAVAHFR
SNGAIVEADAVTDPNLPVESCATCHAEGKTYGIDKVHAEVAH

Sequences:

>Translated_762_residues
MMKNYNKSLLALALTSALCLTACGDGKDGQDGAPGTPGTPGTPGTPGTPGLPAGSFAKTADSITDLKFTLSPADIKVTSS
EGFSVKFSLTGKSSGKDVPFMGLDKIALYSLTANENTSGTGAPIEWQNNAMANNAGTSLTCTLNGLNGTKNACTLTEDTA
NPGTYTATWTYDGAAPIINPNDNPNAVHRVFLRAYNIVNAAGVALSDKVLSVPVDFIPATDELAASGKDTVSSAACKNCH
GEVDGHIAKIEAHHNYQDVKNCVTCHNPDQVPSDAQLAEGWVFDFAPMIHRIHAGEHNADYLSGEAKEYFGEIGFPSDLK
ECKSCHDGEPSYNTNIYAQACVGCHINVNFATGENHSEFGLAQADDTQCKSCHGSGSLTPEAVHSVGKRAEYASLMTVDF
TSATLGTSATVGYQTLTLKANVTLNGATIADGTSLKTYNATSNPTAILAANGLLLGNVATDGTVYSWRDVKPTAVSLKLE
NGTLSGGVLTFVKDIPDAQAIGTIYVGSEANFCAKAGKVVSCNTEGLEYGPTSPVGNTSAVKFFNLSGGTPAVARMNDPA
RITVEEAKCNACHGSLDYAKGYRHGVYTFDQCMNCHNDTTGASGHGATGYKGEDGKLVVNPDVTFNNKDLFTVAHRFHSG
NFGVVEGIFRNAAGELEGYPSPETACSACHKDGATLFAADGGLTSGKRSIKVGSNYISPVAESCRTCHAHSDAAAVAHFR
SNGAIVEADAVTDPNLPVESCATCHAEGKTYGIDKVHAEVAH
>Mature_762_residues
MMKNYNKSLLALALTSALCLTACGDGKDGQDGAPGTPGTPGTPGTPGTPGLPAGSFAKTADSITDLKFTLSPADIKVTSS
EGFSVKFSLTGKSSGKDVPFMGLDKIALYSLTANENTSGTGAPIEWQNNAMANNAGTSLTCTLNGLNGTKNACTLTEDTA
NPGTYTATWTYDGAAPIINPNDNPNAVHRVFLRAYNIVNAAGVALSDKVLSVPVDFIPATDELAASGKDTVSSAACKNCH
GEVDGHIAKIEAHHNYQDVKNCVTCHNPDQVPSDAQLAEGWVFDFAPMIHRIHAGEHNADYLSGEAKEYFGEIGFPSDLK
ECKSCHDGEPSYNTNIYAQACVGCHINVNFATGENHSEFGLAQADDTQCKSCHGSGSLTPEAVHSVGKRAEYASLMTVDF
TSATLGTSATVGYQTLTLKANVTLNGATIADGTSLKTYNATSNPTAILAANGLLLGNVATDGTVYSWRDVKPTAVSLKLE
NGTLSGGVLTFVKDIPDAQAIGTIYVGSEANFCAKAGKVVSCNTEGLEYGPTSPVGNTSAVKFFNLSGGTPAVARMNDPA
RITVEEAKCNACHGSLDYAKGYRHGVYTFDQCMNCHNDTTGASGHGATGYKGEDGKLVVNPDVTFNNKDLFTVAHRFHSG
NFGVVEGIFRNAAGELEGYPSPETACSACHKDGATLFAADGGLTSGKRSIKVGSNYISPVAESCRTCHAHSDAAAVAHFR
SNGAIVEADAVTDPNLPVESCATCHAEGKTYGIDKVHAEVAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79286; Mature: 79286

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00071 GAPDH ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNYNKSLLALALTSALCLTACGDGKDGQDGAPGTPGTPGTPGTPGTPGLPAGSFAKTA
CCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
DSITDLKFTLSPADIKVTSSEGFSVKFSLTGKSSGKDVPFMGLDKIALYSLTANENTSGT
CCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
GAPIEWQNNAMANNAGTSLTCTLNGLNGTKNACTLTEDTANPGTYTATWTYDGAAPIINP
CCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEECC
NDNPNAVHRVFLRAYNIVNAAGVALSDKVLSVPVDFIPATDELAASGKDTVSSAACKNCH
CCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCEEEECCCHHHHCCCCHHHHHHHHHCCC
GEVDGHIAKIEAHHNYQDVKNCVTCHNPDQVPSDAQLAEGWVFDFAPMIHRIHAGEHNAD
CCCCCEEEEEEECCCHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCH
YLSGEAKEYFGEIGFPSDLKECKSCHDGEPSYNTNIYAQACVGCHINVNFATGENHSEFG
HCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCC
LAQADDTQCKSCHGSGSLTPEAVHSVGKRAEYASLMTVDFTSATLGTSATVGYQTLTLKA
CCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCEEEEEEEE
NVTLNGATIADGTSLKTYNATSNPTAILAANGLLLGNVATDGTVYSWRDVKPTAVSLKLE
EEEECCCEECCCCEEEEECCCCCCEEEEEECCEEEECCCCCCEEEEECCCCCEEEEEEEC
NGTLSGGVLTFVKDIPDAQAIGTIYVGSEANFCAKAGKVVSCNTEGLEYGPTSPVGNTSA
CCCCCCCHHHHHHHCCCCHHEEEEEECCCCCHHHHCCEEEEECCCCCCCCCCCCCCCCCE
VKFFNLSGGTPAVARMNDPARITVEEAKCNACHGSLDYAKGYRHGVYTFDQCMNCHNDTT
EEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCCEEHHHHHCCCCCCC
GASGHGATGYKGEDGKLVVNPDVTFNNKDLFTVAHRFHSGNFGVVEGIFRNAAGELEGYP
CCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEEEHHCCCCCHHHHHHHHHCCCCCCCCC
SPETACSACHKDGATLFAADGGLTSGKRSIKVGSNYISPVAESCRTCHAHSDAAAVAHFR
CHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCHHEEEEEC
SNGAIVEADAVTDPNLPVESCATCHAEGKTYGIDKVHAEVAH
CCCCEEEECCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHCC
>Mature Secondary Structure
MMKNYNKSLLALALTSALCLTACGDGKDGQDGAPGTPGTPGTPGTPGTPGLPAGSFAKTA
CCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
DSITDLKFTLSPADIKVTSSEGFSVKFSLTGKSSGKDVPFMGLDKIALYSLTANENTSGT
CCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
GAPIEWQNNAMANNAGTSLTCTLNGLNGTKNACTLTEDTANPGTYTATWTYDGAAPIINP
CCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEECC
NDNPNAVHRVFLRAYNIVNAAGVALSDKVLSVPVDFIPATDELAASGKDTVSSAACKNCH
CCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCEEEECCCHHHHCCCCHHHHHHHHHCCC
GEVDGHIAKIEAHHNYQDVKNCVTCHNPDQVPSDAQLAEGWVFDFAPMIHRIHAGEHNAD
CCCCCEEEEEEECCCHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCH
YLSGEAKEYFGEIGFPSDLKECKSCHDGEPSYNTNIYAQACVGCHINVNFATGENHSEFG
HCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCC
LAQADDTQCKSCHGSGSLTPEAVHSVGKRAEYASLMTVDFTSATLGTSATVGYQTLTLKA
CCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCEEEEEEEE
NVTLNGATIADGTSLKTYNATSNPTAILAANGLLLGNVATDGTVYSWRDVKPTAVSLKLE
EEEECCCEECCCCEEEEECCCCCCEEEEEECCEEEECCCCCCEEEEECCCCCEEEEEEEC
NGTLSGGVLTFVKDIPDAQAIGTIYVGSEANFCAKAGKVVSCNTEGLEYGPTSPVGNTSA
CCCCCCCHHHHHHHCCCCHHEEEEEECCCCCHHHHCCEEEEECCCCCCCCCCCCCCCCCE
VKFFNLSGGTPAVARMNDPARITVEEAKCNACHGSLDYAKGYRHGVYTFDQCMNCHNDTT
EEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCCEEHHHHHCCCCCCC
GASGHGATGYKGEDGKLVVNPDVTFNNKDLFTVAHRFHSGNFGVVEGIFRNAAGELEGYP
CCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEEEHHCCCCCHHHHHHHHHCCCCCCCCC
SPETACSACHKDGATLFAADGGLTSGKRSIKVGSNYISPVAESCRTCHAHSDAAAVAHFR
CHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCHHEEEEEC
SNGAIVEADAVTDPNLPVESCATCHAEGKTYGIDKVHAEVAH
CCCCEEEECCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA