| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is sbcB [H]
Identifier: 117921013
GI number: 117921013
Start: 3076054
End: 3077466
Strand: Direct
Name: sbcB [H]
Synonym: Shewana3_2572
Alternate gene names: 117921013
Gene position: 3076054-3077466 (Clockwise)
Preceding gene: 117921009
Following gene: 117921014
Centisome position: 61.86
GC content: 46.85
Gene sequence:
>1413_bases ATGTATACAGCATCTCAGCCAAGTATTTTTTGGCACGATTATGAAACCTTCGGAGCCAATCCCGCCAAGGATAGACCGGC CCAGTTTGCCGGGATCCGCACAGACTTAGATCTCAATATCATCAGTGAACCCGAGACTTTTTACTGTAAACAATCAACGG ATTATCTCCCCTCGCCAGAAGCTATTTTAATCACAGGGATCACACCACAATTAGCCAATTTAAAGGGTTTGCCTGAAACC GAGTTTATGGGGCGTATTCATGCCCTCTTTAGCCAACCGAATACCTGTGTCGCAGGCTATAACTCCTTACGCTTTGACGA TGAAGTCACCCGCTACGGTTTCTACCGTAACTTTATCGACCCCTATGCCCGCGAATGGCAAAATGGCAATACACGCTGGG ATATCATCGATTTAGTCAGAGCTTGCTACGCGTTTAGACCAGACGGGATCCATTGGCCATTAAAAGAAGATGGCTCGCCC AGCTTTAAGTTAGAGCACCTAACGCAAGCCAATGGTTTAAGCCATGAAAAAGCCCACGATGCCATGTCTGATGTGTACGC CACCATCGCTATGGCCAAGCTAATTAAAGAAAAGCAACCCAAGTTATATCAATACTATTTCGAGCTACGCCGTAAACAGG CCGTGAGTGCCCAAATCGATGTGTTGAATATGCAGCCGCTTGCCCATGTGAGTTCCAAAATCAGTGCGCTGCAGGGGTGT ACAACTCTTATTGCCCCTGTTGCCCACCATCCAAGCAACAAAAACGCCATTATTTGCGTTAACTTAGCCATGGATTTAAG CCCGCTGTTTGAGTTAGATGTCGAGCAAATAAAGACTCGCATGTATACGCCGAGAGCCGAGCTTGCCGCGGATGAGTTAC CTATCCCAGTCAAACAAGTTCATCTTAACAAATGCCCTTTTATTACCTCGGCCAAGATTTTGGATGATGCCCAGGCAGAA AGACTCAATATCGATAAAGCCTTTGCGAGAGAGCAATACAAACGCTTAAAGGCTCACCCTGAATTGCGGGAAAAACTGGC ACAACTCTTTGAGCATGAAGGTGAAGTCACAACCACAGATCCTGACTTAATGCTGTATTCGGGTGGTTTTTTCAGCCCCG CCGATAAAGCCAAGATGGAGATCATTCGTCATACCTTGCCACAAAATTTAGCGGCGCTGGATCTGCAGTTTGATGATGGA CGCATACCCGAGATGCTGTTCCGCTATCGAGCACGTAACTATCCTGAGCTGCTAAATGATCAAGAAGCTCAGCGTTGGCG TACTTTCTGCCAACAACGTTTGAGCGATCAGGATTATTTACTCAAACTTGAAAATCTGCTGCAAGATACCGAGGGTGATG AACACAAACAGAAGTTACTCGCGGCCCTGTGTCACTATCTACGCGGGCTCTAA
Upstream 100 bases:
>100_bases TCAATATAATTTCTCAATCTCGGTTTTTGCTAATGAATATTGCGGTGAGTTTAAGTGTTAAGATGCTATCATTCGACAAA ACCGTCATTTGATTGAAATT
Downstream 100 bases:
>100_bases AGCTACGCGGACTCTACAACACCGATAGCCAATCGCTAAGCAGAGAGTTTAATCAGATAAGACCGTTATTTAACGCCAGA CATTGATAACTTCTTTCAGT
Product: exonuclease I
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MYTASQPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLANLKGLPET EFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSP SFKLEHLTQANGLSHEKAHDAMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGC TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCPFITSAKILDDAQAE RLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDG RIPEMLFRYRARNYPELLNDQEAQRWRTFCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL
Sequences:
>Translated_470_residues MYTASQPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLANLKGLPET EFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSP SFKLEHLTQANGLSHEKAHDAMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGC TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCPFITSAKILDDAQAE RLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDG RIPEMLFRYRARNYPELLNDQEAQRWRTFCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL >Mature_470_residues MYTASQPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLANLKGLPET EFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSP SFKLEHLTQANGLSHEKAHDAMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGC TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCPFITSAKILDDAQAE RLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDG RIPEMLFRYRARNYPELLNDQEAQRWRTFCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL
Specific function: Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=465, Percent_Identity=52.258064516129, Blast_Score=493, Evalue=1e-141,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 53944; Mature: 53944
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTASQPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPE CCCCCCCCEEEECHHHCCCCCCCCCCCHHCCCEECCCEEEECCCCEEEECCCCCCCCCCC AILITGITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFID EEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHH PYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHD HHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCHHHHHH AMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGC HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQV HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHH HLNKCPFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTD HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECC PDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLND CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHCC QEAQRWRTFCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYTASQPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPE CCCCCCCCEEEECHHHCCCCCCCCCCCHHCCCEECCCEEEECCCCEEEECCCCCCCCCCC AILITGITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFID EEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHH PYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHD HHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCHHHHHH AMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGC HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQV HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHH HLNKCPFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTD HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECC PDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLND CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHCC QEAQRWRTFCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3539937; 9097040; 9278503; 1329027 [H]