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The map label for this gene is cdd [H]

Identifier: 117921014

GI number: 117921014

Start: 3077679

End: 3078569

Strand: Direct

Name: cdd [H]

Synonym: Shewana3_2573

Alternate gene names: 117921014

Gene position: 3077679-3078569 (Clockwise)

Preceding gene: 117921013

Following gene: 117921018

Centisome position: 61.9

GC content: 51.29

Gene sequence:

>891_bases
ATGCAAGATAGATTTATCAAAAGCATAACCCAGCTGCCAACACCATTGGCTGACGCATTAATTCCCCTATTACATCAAAA
CTTTGCGGGACATATTGATGCACAGCAACTGGCAGAGTTAGTCCAAAGCAGCAAAATGACCGAAGCCGAAGTATTACTGG
CGCTGCTGCCTATTGCCGCCGCCTTGGCGAAACCGCCGATTAGCGAGTTTTATGTCGGCGCGATTGCCAAAGGGAAAAGT
GGCGACATCTATATGGGCGCTAACCTTGAGCTGCTCGGCGAGGCCCTGTTTCACTCTGTGCATGCGGAGCAAAGCGCCAT
CAGTCACGCTTGGTTAAGTGGCGAGAGCCAAATTGTCGATATGATAGTCAACGCCAGTCCCTGCGGTCATTGCCGTCAGT
TTATGAACGAACTCGTCGAAGGTGGTCAAATCAAGATCCATTTGCCATCGCAAGACAGCCATTTACTGTCCTATTACCTA
CCCTACGCGTTTGGGCCGAAGGACTTAAATGTGCAGTCGCCCTTGCTGGTCAAGCAGGAAACCGAATTTGCCCTCGATAG
CAGCGATCCTATGGTGATTGAGGCGTTAGATCATGCGGGTTTAAGCTACGCGCCTTATACCCAAAGTTATGCGGCCGTCG
TATTAGAAACAGCGGACGGCGCAACCTATTGTGGTCGCTACGCTGAAAACGCGGCGTTTAACCCTTCCATGCTGCCAATG
CAAATGGCCTTATCGAATCTGACTCGACATAACCGTGATTTTGGCGAGATCCGCCGCGCGGTGCTGGTCGAGTCATCACA
GGGGAAAATCAGTTTAGTGGGCGCAACCATGGATGCGTTACATGCCGTTGCGGCCATCGAACTTGAGCATATTGTGGTCG
ACCCCGTCTAA

Upstream 100 bases:

>100_bases
GGCGTTAAATTGAGGTATAAACGCGAACTAACTCGCATTTATACCGTAACAAAATTACTAGAATGTTCTTCCATGAACTT
AACAAACAAGGAGTCGGGAA

Downstream 100 bases:

>100_bases
CAAGAGTCCGGCGGCGCTTTAGCTTTACACAATCGTATTTGCTGGGCGCCGTTTTCTCATCTCTTACCTCTAGCGGTTCT
AAGTCACTTAGCTAAGTGAC

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQDRFIKSITQLPTPLADALIPLLHQNFAGHIDAQQLAELVQSSKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELLGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQDSHLLSYYL
PYAFGPKDLNVQSPLLVKQETEFALDSSDPMVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPM
QMALSNLTRHNRDFGEIRRAVLVESSQGKISLVGATMDALHAVAAIELEHIVVDPV

Sequences:

>Translated_296_residues
MQDRFIKSITQLPTPLADALIPLLHQNFAGHIDAQQLAELVQSSKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELLGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQDSHLLSYYL
PYAFGPKDLNVQSPLLVKQETEFALDSSDPMVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPM
QMALSNLTRHNRDFGEIRRAVLVESSQGKISLVGATMDALHAVAAIELEHIVVDPV
>Mature_296_residues
MQDRFIKSITQLPTPLADALIPLLHQNFAGHIDAQQLAELVQSSKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELLGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGHCRQFMNELVEGGQIKIHLPSQDSHLLSYYL
PYAFGPKDLNVQSPLLVKQETEFALDSSDPMVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPM
QMALSNLTRHNRDFGEIRRAVLVESSQGKISLVGATMDALHAVAAIELEHIVVDPV

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis [H]

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788465, Length=294, Percent_Identity=43.5374149659864, Blast_Score=220, Evalue=7e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2 [H]

EC number: =3.5.4.5 [H]

Molecular weight: Translated: 32035; Mature: 32035

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRFIKSITQLPTPLADALIPLLHQNFAGHIDAQQLAELVQSSKMTEAEVLLALLPIAA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALAKPPISEFYVGAIAKGKSGDIYMGANLELLGEALFHSVHAEQSAISHAWLSGESQIVD
HHHCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
MIVNASPCGHCRQFMNELVEGGQIKIHLPSQDSHLLSYYLPYAFGPKDLNVQSPLLVKQE
HHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEECC
TEFALDSSDPMVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPM
CCCCCCCCCCEEEEEHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCHHHH
QMALSNLTRHNRDFGEIRRAVLVESSQGKISLVGATMDALHAVAAIELEHIVVDPV
HHHHHHHHHCCCCHHHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHEEEEEEECCC
>Mature Secondary Structure
MQDRFIKSITQLPTPLADALIPLLHQNFAGHIDAQQLAELVQSSKMTEAEVLLALLPIAA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALAKPPISEFYVGAIAKGKSGDIYMGANLELLGEALFHSVHAEQSAISHAWLSGESQIVD
HHHCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
MIVNASPCGHCRQFMNELVEGGQIKIHLPSQDSHLLSYYLPYAFGPKDLNVQSPLLVKQE
HHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEECC
TEFALDSSDPMVIEALDHAGLSYAPYTQSYAAVVLETADGATYCGRYAENAAFNPSMLPM
CCCCCCCCCCEEEEEHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCHHHH
QMALSNLTRHNRDFGEIRRAVLVESSQGKISLVGATMDALHAVAAIELEHIVVDPV
HHHHHHHHHCCCCHHHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]