| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is slt [H]
Identifier: 117920679
GI number: 117920679
Start: 2688936
End: 2690861
Strand: Direct
Name: slt [H]
Synonym: Shewana3_2236
Alternate gene names: 117920679
Gene position: 2688936-2690861 (Clockwise)
Preceding gene: 117920678
Following gene: 117920680
Centisome position: 54.08
GC content: 50.57
Gene sequence:
>1926_bases ATGTGCAACCCATTGACAAAGATGGTGTTATCCAGCGCAATTATCATCGCAGGGGCATTTAATGCCTCTGCGGCTTTCGC GTTAACTTCTACCCAGAAGACCTTTCTTGAGGCTGAAAAAGCCCTAAAGAAACAAGACTATGCCACCTACAAGCCCCTGC GAGCTAAGTTAGGCGATTATCCGCTGGCGATTTATCTCGACCATGATATCGACATTGGCAAGCTTAACGATTTACGCGGC AACGACGCTAAGGCCATGATAGATAAGTATCAAACCACGCCTATGTATCAGCGCCTGCGTTCAAAATATTTATTAAATGC CGGCGGCCAAAAGCGTTGGAACGACTTTTTGAGCCTCGCCCAAGACGCGCCGACCGATGTCAGGCTGCAGTGTTATTTCT ATGAGGCCAAACTCGCCAAGGGCGAAACCCAAACCGCCTACACGGCGGCGCAGTCACTTTGGGTCTATGGCGATTCCCGT CCCAAGGAATGCGATCCCCTCTTCAATGCCTGGACCAAAGCCGGTAAGCGCACTCAGGATGTGATTTGGGCGCGGATGTT ACTGAGCTTCGATGAGGGCCAAACCAGCCTGCTGAGTTACCTATCGCAAAAAATCACCGTGCATAGCGCAGAGGCAAAAC GCTTAGTGGCGGTGTTTAAAGACCCCAATAGCCTGCGCCATACCGAAAAATTTAAGGACAAAAATCCTATCGTTGGCGAT ATCGTCGCCGCAGGCTTAAAACGCCTTGCCCGTAAGGATCTCGACCAAGCCATTAATTTATATACTCGGTATCAAAAAGC GAAACGCTTTACTCCAGCTCAGGATCAACAGCTGCAAAAGTATCTAGTACGCCGCGTGTTGATTGAGCAGGATGATAATT TTAAAGACTGGGCCGATAACCTGCTGCCCGAGATGAAGAGCGATGATATGTTCGAGCGCCGCTTACGCTGGGCGATCCGC GAGCAGGACAGCACCCATATCGCGCGCTACTTAGATTTATTATCGCCAGAAAGCGCAGCCAAAGAGCGCTGGCAGTATTG GCTGTATCGCACTAACGCGAAACACGCTCCCGAAAGCGCCACTAAGGCGTTAGCAGCTGTCAGTAATGAGCGCAACTTTT ACGGTTTTGCCGCATCGCAGTTATTGAATAAGCCCGTGTCCTTAAATCAAAGCCCTGAGCCTGTGGTGGATGGGACCAGT CAAAAACTCGAAGACGATTTAGGCTTTGTGCGCGTACTGGAGTTGATGGCGCTGGATCGTTACTTCGATGCCCGTTATGA ATGGGTCGCCCTACTAAAGCGCAGCAATAATGAGATGCGCGCCCGCTATGGTCGTTATGCCCACGATCAAGGCTGGTATG ACTTTGGCGTAGAAGCCAGTATTCAAGGCAAGCTCTGGGATGATATTCCCCTGCGCTTCCCGATGGCACATCAGTCAGGC TTCGAACACGCCAGTAAAAAGCACAAGGTCAACATTGATGAAATCCGCGCCATTAGCCGCCGCGAAAGTGCGTTTTTCCT CTATGCGACCTCAGGTGTCGGCGCCCGCGGTTTAATGCAGATTATGCCCGCAACAGCCAAGGCTACCGCGAAGAAACACG GGGCTAAGTACAGCGATCCTAAGGATCTCTACAGCGCCGAGCTGAACTTAAACTTAGGCAGTGCCTATTACGCACAATTG TTGAAGGATTTCAATCAAAACCGCGTGTTAGCAACCGCCGCCTATAACGCTGGCCCCTCGAGGGTTCGCCGCTGGTTAGC GGAGTCGAATGGAAAGCTCGATGCCATGAGTTTTATCGAGTCCATTCCCTTCACCGAAACCCGTGAATATGTGCAAGCCG TGTTAAGTTATCGGTTGATTTACGAGGCGCAAAAACAAAAGCCACAGCCTTTATTTAATGAGGCTGAGCTTAAGTTCCAT TACTAA
Upstream 100 bases:
>100_bases ACAATAACGATAAACACGCAGTTTAAAAGCCAATAACTCATAATCCTGAATCGATAGGGAAAAGTCGATTGTAACCTTGA TGCCCGGAGGCAAGTTCTGC
Downstream 100 bases:
>100_bases GCCGCATGGCGGAAATGGGATAGTTATCAAACAGTAATCAAGGTGGCGTTGGCCACCTTGATTATTTTTGGCCACATCAA GATGCCGTTTTATCACAAGG
Product: lytic transglycosylase, catalytic
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 641; Mature: 641
Protein sequence:
>641_residues MCNPLTKMVLSSAIIIAGAFNASAAFALTSTQKTFLEAEKALKKQDYATYKPLRAKLGDYPLAIYLDHDIDIGKLNDLRG NDAKAMIDKYQTTPMYQRLRSKYLLNAGGQKRWNDFLSLAQDAPTDVRLQCYFYEAKLAKGETQTAYTAAQSLWVYGDSR PKECDPLFNAWTKAGKRTQDVIWARMLLSFDEGQTSLLSYLSQKITVHSAEAKRLVAVFKDPNSLRHTEKFKDKNPIVGD IVAAGLKRLARKDLDQAINLYTRYQKAKRFTPAQDQQLQKYLVRRVLIEQDDNFKDWADNLLPEMKSDDMFERRLRWAIR EQDSTHIARYLDLLSPESAAKERWQYWLYRTNAKHAPESATKALAAVSNERNFYGFAASQLLNKPVSLNQSPEPVVDGTS QKLEDDLGFVRVLELMALDRYFDARYEWVALLKRSNNEMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPMAHQSG FEHASKKHKVNIDEIRAISRRESAFFLYATSGVGARGLMQIMPATAKATAKKHGAKYSDPKDLYSAELNLNLGSAYYAQL LKDFNQNRVLATAAYNAGPSRVRRWLAESNGKLDAMSFIESIPFTETREYVQAVLSYRLIYEAQKQKPQPLFNEAELKFH Y
Sequences:
>Translated_641_residues MCNPLTKMVLSSAIIIAGAFNASAAFALTSTQKTFLEAEKALKKQDYATYKPLRAKLGDYPLAIYLDHDIDIGKLNDLRG NDAKAMIDKYQTTPMYQRLRSKYLLNAGGQKRWNDFLSLAQDAPTDVRLQCYFYEAKLAKGETQTAYTAAQSLWVYGDSR PKECDPLFNAWTKAGKRTQDVIWARMLLSFDEGQTSLLSYLSQKITVHSAEAKRLVAVFKDPNSLRHTEKFKDKNPIVGD IVAAGLKRLARKDLDQAINLYTRYQKAKRFTPAQDQQLQKYLVRRVLIEQDDNFKDWADNLLPEMKSDDMFERRLRWAIR EQDSTHIARYLDLLSPESAAKERWQYWLYRTNAKHAPESATKALAAVSNERNFYGFAASQLLNKPVSLNQSPEPVVDGTS QKLEDDLGFVRVLELMALDRYFDARYEWVALLKRSNNEMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPMAHQSG FEHASKKHKVNIDEIRAISRRESAFFLYATSGVGARGLMQIMPATAKATAKKHGAKYSDPKDLYSAELNLNLGSAYYAQL LKDFNQNRVLATAAYNAGPSRVRRWLAESNGKLDAMSFIESIPFTETREYVQAVLSYRLIYEAQKQKPQPLFNEAELKFH Y >Mature_641_residues MCNPLTKMVLSSAIIIAGAFNASAAFALTSTQKTFLEAEKALKKQDYATYKPLRAKLGDYPLAIYLDHDIDIGKLNDLRG NDAKAMIDKYQTTPMYQRLRSKYLLNAGGQKRWNDFLSLAQDAPTDVRLQCYFYEAKLAKGETQTAYTAAQSLWVYGDSR PKECDPLFNAWTKAGKRTQDVIWARMLLSFDEGQTSLLSYLSQKITVHSAEAKRLVAVFKDPNSLRHTEKFKDKNPIVGD IVAAGLKRLARKDLDQAINLYTRYQKAKRFTPAQDQQLQKYLVRRVLIEQDDNFKDWADNLLPEMKSDDMFERRLRWAIR EQDSTHIARYLDLLSPESAAKERWQYWLYRTNAKHAPESATKALAAVSNERNFYGFAASQLLNKPVSLNQSPEPVVDGTS QKLEDDLGFVRVLELMALDRYFDARYEWVALLKRSNNEMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPMAHQSG FEHASKKHKVNIDEIRAISRRESAFFLYATSGVGARGLMQIMPATAKATAKKHGAKYSDPKDLYSAELNLNLGSAYYAQL LKDFNQNRVLATAAYNAGPSRVRRWLAESNGKLDAMSFIESIPFTETREYVQAVLSYRLIYEAQKQKPQPLFNEAELKFH Y
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=623, Percent_Identity=29.2134831460674, Blast_Score=295, Evalue=7e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 73425; Mature: 73425
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNPLTKMVLSSAIIIAGAFNASAAFALTSTQKTFLEAEKALKKQDYATYKPLRAKLGDY CCCHHHHHHHHHHHHEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC PLAIYLDHDIDIGKLNDLRGNDAKAMIDKYQTTPMYQRLRSKYLLNAGGQKRWNDFLSLA CEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH QDAPTDVRLQCYFYEAKLAKGETQTAYTAAQSLWVYGDSRPKECDPLFNAWTKAGKRTQD HCCCCCEEEEEEEEEEHHCCCCCHHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCHHHH VIWARMLLSFDEGQTSLLSYLSQKITVHSAEAKRLVAVFKDPNSLRHTEKFKDKNPIVGD HHHHHHHHHHCCCHHHHHHHHHHHHEEECHHHHEEEEEECCCCHHHHHHHHCCCCCCHHH IVAAGLKRLARKDLDQAINLYTRYQKAKRFTPAQDQQLQKYLVRRVLIEQDDNFKDWADN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH LLPEMKSDDMFERRLRWAIREQDSTHIARYLDLLSPESAAKERWQYWLYRTNAKHAPESA HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCHHH TKALAAVSNERNFYGFAASQLLNKPVSLNQSPEPVVDGTSQKLEDDLGFVRVLELMALDR HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH YFDARYEWVALLKRSNNEMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPMAHQSG HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCHHHCC FEHASKKHKVNIDEIRAISRRESAFFLYATSGVGARGLMQIMPATAKATAKKHGAKYSDP HHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCCH KDLYSAELNLNLGSAYYAQLLKDFNQNRVLATAAYNAGPSRVRRWLAESNGKLDAMSFIE HHHHEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHH SIPFTETREYVQAVLSYRLIYEAQKQKPQPLFNEAELKFHY HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC >Mature Secondary Structure MCNPLTKMVLSSAIIIAGAFNASAAFALTSTQKTFLEAEKALKKQDYATYKPLRAKLGDY CCCHHHHHHHHHHHHEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC PLAIYLDHDIDIGKLNDLRGNDAKAMIDKYQTTPMYQRLRSKYLLNAGGQKRWNDFLSLA CEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH QDAPTDVRLQCYFYEAKLAKGETQTAYTAAQSLWVYGDSRPKECDPLFNAWTKAGKRTQD HCCCCCEEEEEEEEEEHHCCCCCHHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCHHHH VIWARMLLSFDEGQTSLLSYLSQKITVHSAEAKRLVAVFKDPNSLRHTEKFKDKNPIVGD HHHHHHHHHHCCCHHHHHHHHHHHHEEECHHHHEEEEEECCCCHHHHHHHHCCCCCCHHH IVAAGLKRLARKDLDQAINLYTRYQKAKRFTPAQDQQLQKYLVRRVLIEQDDNFKDWADN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH LLPEMKSDDMFERRLRWAIREQDSTHIARYLDLLSPESAAKERWQYWLYRTNAKHAPESA HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCHHH TKALAAVSNERNFYGFAASQLLNKPVSLNQSPEPVVDGTSQKLEDDLGFVRVLELMALDR HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH YFDARYEWVALLKRSNNEMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPMAHQSG HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCHHHCC FEHASKKHKVNIDEIRAISRRESAFFLYATSGVGARGLMQIMPATAKATAKKHGAKYSDP HHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCCH KDLYSAELNLNLGSAYYAQLLKDFNQNRVLATAAYNAGPSRVRRWLAESNGKLDAMSFIE HHHHEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHH SIPFTETREYVQAVLSYRLIYEAQKQKPQPLFNEAELKFHY HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]