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The map label for this gene is rtn [C]

Identifier: 117920680

GI number: 117920680

Start: 2691076

End: 2691777

Strand: Direct

Name: rtn [C]

Synonym: Shewana3_2237

Alternate gene names: 117920680

Gene position: 2691076-2691777 (Clockwise)

Preceding gene: 117920679

Following gene: 117920681

Centisome position: 54.12

GC content: 49.72

Gene sequence:

>702_bases
ATGCTCAATCTCAGCGGTTTATCCTTAAGTTGCGAATATCAGCCCTTTGTCTGTCCCCATACTCAACGCATTCATGGCTA
TGAAGCACTCGCCCGTTTTTACCTTGAGCAGGGTCAAGCCATCGCCCCGAATCTAGTGTTTGAGCAATTACACGAAGCCA
GCGAACAACTGGCGGCGGTCGAGTTTCAGGCAAAAGCCTTTCAGCTCAAACACGCCCCTCAGGCGCAGCGATTATTTGTG
AATGTGGACCCCCACGCGGTGGATGGCGCGCATACCCAAAAGTTACTCGACCAGCTATCGCAGCATCCGCAATTAACGGT
AGAAATCATTGAAAACACCTGCGTGAGTGATGCCGAACTTGCTAATCGCTTGTTCCATCAATTTAAAGCGGCCAATATTC
AAGTGGCGCTCGATGATATCGGCGCCCCTCACTCCATGCTCTCCATCGATTTAATGATGAATGTGGACTACCTCAAGTTT
GACCGCTACTGGCTTAAATTAATCGACGCGCCCCATGGTATCGCCCTGCTCAGCGCCCTGATTGAATTTGGCAAACGCAC
GGGCAAACAATGCATCCTCGAAGGCATAGAAACCGAGGCACAACTCCAGCTAGCCCGCGAGCTAAATATCGATCTAGTAC
AGGGATTTCTATTCAAACCTTGGTTTATCCGCCCCGAGCAAAGTGAAAGGTTAATTTGTTAG

Upstream 100 bases:

>100_bases
TGTTTAATCGGCAAACGCGCTCAAGCCAGGTAAACTTGTTTGCACTCTTGGCCACTAAATGCGAATAATTAGCGATTAGT
CATTTAACACGCCAGTCTCG

Downstream 100 bases:

>100_bases
GGAAGGATGCAGTCACATACTGGTATGGAAGAATTAATCATGTTCATGGCCATTGGTAACTCTGAGATTCTTCAAATTTA
ATGTCACCTAGCGCAGATAT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MLNLSGLSLSCEYQPFVCPHTQRIHGYEALARFYLEQGQAIAPNLVFEQLHEASEQLAAVEFQAKAFQLKHAPQAQRLFV
NVDPHAVDGAHTQKLLDQLSQHPQLTVEIIENTCVSDAELANRLFHQFKAANIQVALDDIGAPHSMLSIDLMMNVDYLKF
DRYWLKLIDAPHGIALLSALIEFGKRTGKQCILEGIETEAQLQLARELNIDLVQGFLFKPWFIRPEQSERLIC

Sequences:

>Translated_233_residues
MLNLSGLSLSCEYQPFVCPHTQRIHGYEALARFYLEQGQAIAPNLVFEQLHEASEQLAAVEFQAKAFQLKHAPQAQRLFV
NVDPHAVDGAHTQKLLDQLSQHPQLTVEIIENTCVSDAELANRLFHQFKAANIQVALDDIGAPHSMLSIDLMMNVDYLKF
DRYWLKLIDAPHGIALLSALIEFGKRTGKQCILEGIETEAQLQLARELNIDLVQGFLFKPWFIRPEQSERLIC
>Mature_233_residues
MLNLSGLSLSCEYQPFVCPHTQRIHGYEALARFYLEQGQAIAPNLVFEQLHEASEQLAAVEFQAKAFQLKHAPQAQRLFV
NVDPHAVDGAHTQKLLDQLSQHPQLTVEIIENTCVSDAELANRLFHQFKAANIQVALDDIGAPHSMLSIDLMMNVDYLKF
DRYWLKLIDAPHGIALLSALIEFGKRTGKQCILEGIETEAQLQLARELNIDLVQGFLFKPWFIRPEQSERLIC

Specific function: Involved In Resistance To Phages N4 And Lambda. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788502, Length=228, Percent_Identity=28.0701754385965, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790496, Length=229, Percent_Identity=27.9475982532751, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081743, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 26403; Mature: 26403

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLSGLSLSCEYQPFVCPHTQRIHGYEALARFYLEQGQAIAPNLVFEQLHEASEQLAAV
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EFQAKAFQLKHAPQAQRLFVNVDPHAVDGAHTQKLLDQLSQHPQLTVEIIENTCVSDAEL
HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHH
ANRLFHQFKAANIQVALDDIGAPHSMLSIDLMMNVDYLKFDRYWLKLIDAPHGIALLSAL
HHHHHHHHHHCCEEEEECCCCCCHHHEEEHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
IEFGKRTGKQCILEGIETEAQLQLARELNIDLVQGFLFKPWFIRPEQSERLIC
HHHHHHCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCCCCCC
>Mature Secondary Structure
MLNLSGLSLSCEYQPFVCPHTQRIHGYEALARFYLEQGQAIAPNLVFEQLHEASEQLAAV
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EFQAKAFQLKHAPQAQRLFVNVDPHAVDGAHTQKLLDQLSQHPQLTVEIIENTCVSDAEL
HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHH
ANRLFHQFKAANIQVALDDIGAPHSMLSIDLMMNVDYLKFDRYWLKLIDAPHGIALLSAL
HHHHHHHHHHCCEEEEECCCCCCHHHEEEHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
IEFGKRTGKQCILEGIETEAQLQLARELNIDLVQGFLFKPWFIRPEQSERLIC
HHHHHHCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]