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The map label for this gene is rnfE [H]

Identifier: 117920617

GI number: 117920617

Start: 2606015

End: 2606713

Strand: Direct

Name: rnfE [H]

Synonym: Shewana3_2173

Alternate gene names: 117920617

Gene position: 2606015-2606713 (Clockwise)

Preceding gene: 117920616

Following gene: 117920618

Centisome position: 52.41

GC content: 51.93

Gene sequence:

>699_bases
ATGACTAATTATCGCGAAATTGCCTGGCAAGGACTGTGGAAAAACAACCCTGGCTTAGTGCAATTACTGGGTCTGTGCCC
CCTGTTAGCCGTAACGGCCACCCTCACCAACGCCCTCGGGCTTGGGGTTGCCACTATGTTGGTGCTGATAGGCTCAAACA
TTTTAGTCTCGTTGGTACGTGACTATGTGCCTAAGGAAATCCGTATCCCCGTGTTTGTGATGATCATTGCGGCGCTGGTG
ACGGCGGTGCAACTACTGATCAATGCCTACGCCTATGGTCTGTATTTGTCCTTAGGGATCTTCTTGCCGCTGATTGTGAC
CAACTGCATTATCATTGGCCGCGCCGAAGCATTTGCCTCCCGTAATAATGCCTTTAGCGCCGCCTTCGATGGACTGATGA
TGGGGCTTGGCTTTACCTTAGTCTTAGCGGTTCTTGGCGCAACGCGCGAAATTCTCGGCCAAGGCACCCTGTTTGATGGC
GCCGACCAACTGCTCGGCCCATGGGCTAAAGCCTTAACGATTCAGGTATGGCAAGTCGATACCCCCTTCCTGCTGGCGAT
GTTACCACCCGGCGCCTTTATTGTGATGGGCCTACTTATCGCCCTGAAAAACGTTATCGATAAAAAGCTTAAAGAGCGTC
AACCCGAAGTGGCTGTACAACCAAGTGTAACTCGGGCACGGATCACCAAAGTGAGTTAA

Upstream 100 bases:

>100_bases
ACACCACGCGCCTATGTGAAAGCGGTTAAGCGCGCCGTATGGTACTTTACTCAGCATCAAGCAGAGATTTTCAGCCAACC
TCTGAATTGTGAGGCCAACC

Downstream 100 bases:

>100_bases
GCCCTTATTGAGATAACAGCTTAAGTAGTGGGTTTAGCGTTAAACCCACTGCTTACAAGGATCACTATGAATCAAGAAAA
ACGCATCCAAATCCTCACCC

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TAVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATREILGQGTLFDG
ADQLLGPWAKALTIQVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKERQPEVAVQPSVTRARITKVS

Sequences:

>Translated_232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TAVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATREILGQGTLFDG
ADQLLGPWAKALTIQVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKERQPEVAVQPSVTRARITKVS
>Mature_231_residues
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGVATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALVT
AVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLAVLGATREILGQGTLFDGA
DQLLGPWAKALTIQVWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKLKERQPEVAVQPSVTRARITKVS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=212, Percent_Identity=61.7924528301887, Blast_Score=257, Evalue=4e-70,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=33.974358974359, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24988; Mature: 24857

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGVATMLVLIGSNILVSLVR
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYVPKEIRIPVFVMIIAALVTAVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLAVLGATREILGQGTLFDGADQLLGPWAKALTIQVWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKLKERQPEVAVQPSVTRARITKVS
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCC
>Mature Secondary Structure 
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGVATMLVLIGSNILVSLVR
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYVPKEIRIPVFVMIIAALVTAVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLAVLGATREILGQGTLFDGADQLLGPWAKALTIQVWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKLKERQPEVAVQPSVTRARITKVS
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA