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The map label for this gene is 117920521

Identifier: 117920521

GI number: 117920521

Start: 2485902

End: 2487035

Strand: Direct

Name: 117920521

Synonym: Shewana3_2077

Alternate gene names: NA

Gene position: 2485902-2487035 (Clockwise)

Preceding gene: 117920520

Following gene: 117920522

Centisome position: 50.0

GC content: 50.71

Gene sequence:

>1134_bases
ATGGACGCAAAACTCAACATGGATAATCGTCAATCTAACGTATCTGTCTTTAGGCGCTTTCCTTTGGTCTCTGGCTTACT
CGCCGCATTGGCGCTGCCATTAGCGCAAGCCGTGCCTGTGCTCGAAATTAGCCGCGCACAACCCCACAGCGCCACGGTGC
AAACCCTCGATGCGAATGCGCCCTTTATCGAGAGAAGGGCGGATCCTTGGATTATTCGTGACGATGACGGCAGTTACTAC
TTTATTGCCTCAGTGCCAGAGTTTGACCGCATCGAACTTCGCCACGCCAAAACCATCGACGGTTTACGCCAAGCCACACC
TAAAACACTGCGGTACAAGCATGAAACTGGCCCCATGAGTATCGATATTTGGGCGCCTGAGCTGCACAAAATCGATGGTC
GCTGGTATATCTATTTTGCGGCCAGCAATAAGGATGTGCGTTTTCACAACCGCATGTTTGTCTTAGGACTCGAGGGCGAC
TCGCCGATGACGGGCCAATGGCAGGAACTTGGCAAGTTGCAATCGGCGCAGGATGCTTTTTCCCTCGATGCGACCAGCTT
TAGCCTCAAGGGCGAGCGTTATTTTATTTGGGCGCAGCAAGACAAAGCTAAGAGTTACAACACCGGCTTAGTGATTGCCA
AAATGCTCTCGCCGACTCAACTCTCTGATAACGAAACTATTATCAGCGAACCCTTATTGGATTGGGAGCGTTTAGGCTTT
AAAGTCAACGAAGGCGCAGCTGTGTTGGTTAAAAACGGTAAAGTCTTCGTAACCTATTCCGCCAGTGCCACGGATGACCG
TTATGCTATGGGGCTGTTATGGGCCGATGAAAATGCCGATTTACTCGATCCCAAGAGTTGGCATAAATCGCCAAGCCCAG
TCTTTACCACTGAGCCAAGTCTTAATCGTTTTGGTCCTGGCCATAATAGTTTTGTGCTGGCAGAGGATGGTAAAACCGAG
CTGATGTTTTACCATGCGCGTAATTACCTTGAGCTGCAGGGGACGCCATTGACTGACGGTAATCGACACACTTACTACCG
AGCCATTCGCTGGTCGGCGGACGGTTTCCCAGTATTTGATAATCAGCAGAGCGATAGCCAAACCCTGCATCGGCAAGGCA
CGCAATCCCGCTAA

Upstream 100 bases:

>100_bases
CAAACCTATATCACCTTCGATGGCAGCTTAAGCAGTTGGTGGACCAAGATAGTCATTGGCCTGTTACTGTTCTTCTTCAT
CCTGTTACAGAAACTCTTGA

Downstream 100 bases:

>100_bases
CAAGCGAAATGCATTTAATAAACACAAAATAGCACACTTAAGTAATCGAAATAGAAAGGTTTTTCCATGATAAGAGCAAC
AAATAGCCCCCTAGTCGAGC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Alpha-N-arabinofuranosidase II; Alpha-N-AFase II; Arabinosidase II [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MDAKLNMDNRQSNVSVFRRFPLVSGLLAALALPLAQAVPVLEISRAQPHSATVQTLDANAPFIERRADPWIIRDDDGSYY
FIASVPEFDRIELRHAKTIDGLRQATPKTLRYKHETGPMSIDIWAPELHKIDGRWYIYFAASNKDVRFHNRMFVLGLEGD
SPMTGQWQELGKLQSAQDAFSLDATSFSLKGERYFIWAQQDKAKSYNTGLVIAKMLSPTQLSDNETIISEPLLDWERLGF
KVNEGAAVLVKNGKVFVTYSASATDDRYAMGLLWADENADLLDPKSWHKSPSPVFTTEPSLNRFGPGHNSFVLAEDGKTE
LMFYHARNYLELQGTPLTDGNRHTYYRAIRWSADGFPVFDNQQSDSQTLHRQGTQSR

Sequences:

>Translated_377_residues
MDAKLNMDNRQSNVSVFRRFPLVSGLLAALALPLAQAVPVLEISRAQPHSATVQTLDANAPFIERRADPWIIRDDDGSYY
FIASVPEFDRIELRHAKTIDGLRQATPKTLRYKHETGPMSIDIWAPELHKIDGRWYIYFAASNKDVRFHNRMFVLGLEGD
SPMTGQWQELGKLQSAQDAFSLDATSFSLKGERYFIWAQQDKAKSYNTGLVIAKMLSPTQLSDNETIISEPLLDWERLGF
KVNEGAAVLVKNGKVFVTYSASATDDRYAMGLLWADENADLLDPKSWHKSPSPVFTTEPSLNRFGPGHNSFVLAEDGKTE
LMFYHARNYLELQGTPLTDGNRHTYYRAIRWSADGFPVFDNQQSDSQTLHRQGTQSR
>Mature_377_residues
MDAKLNMDNRQSNVSVFRRFPLVSGLLAALALPLAQAVPVLEISRAQPHSATVQTLDANAPFIERRADPWIIRDDDGSYY
FIASVPEFDRIELRHAKTIDGLRQATPKTLRYKHETGPMSIDIWAPELHKIDGRWYIYFAASNKDVRFHNRMFVLGLEGD
SPMTGQWQELGKLQSAQDAFSLDATSFSLKGERYFIWAQQDKAKSYNTGLVIAKMLSPTQLSDNETIISEPLLDWERLGF
KVNEGAAVLVKNGKVFVTYSASATDDRYAMGLLWADENADLLDPKSWHKSPSPVFTTEPSLNRFGPGHNSFVLAEDGKTE
LMFYHARNYLELQGTPLTDGNRHTYYRAIRWSADGFPVFDNQQSDSQTLHRQGTQSR

Specific function: Unknown

COG id: COG3940

COG function: function code R; Predicted beta-xylosidase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016828
- InterPro:   IPR006710
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 42683; Mature: 42683

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKLNMDNRQSNVSVFRRFPLVSGLLAALALPLAQAVPVLEISRAQPHSATVQTLDANA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCC
PFIERRADPWIIRDDDGSYYFIASVPEFDRIELRHAKTIDGLRQATPKTLRYKHETGPMS
CHHHCCCCCEEEECCCCCEEEEEECCCCCCEEEHHHHHHHHHHHCCCHHEEEEECCCCEE
IDIWAPELHKIDGRWYIYFAASNKDVRFHNRMFVLGLEGDSPMTGQWQELGKLQSAQDAF
EEEECCHHEEECCEEEEEEEECCCCEEEECEEEEEEECCCCCCCCCHHHHHHHHCCCHHH
SLDATSFSLKGERYFIWAQQDKAKSYNTGLVIAKMLSPTQLSDNETIISEPLLDWERLGF
EECCEEEEECCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHCCE
KVNEGAAVLVKNGKVFVTYSASATDDRYAMGLLWADENADLLDPKSWHKSPSPVFTTEPS
EECCCCEEEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCEEECCCC
LNRFGPGHNSFVLAEDGKTELMFYHARNYLELQGTPLTDGNRHTYYRAIRWSADGFPVFD
HHHCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEEEECCCCCCEEC
NQQSDSQTLHRQGTQSR
CCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MDAKLNMDNRQSNVSVFRRFPLVSGLLAALALPLAQAVPVLEISRAQPHSATVQTLDANA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCC
PFIERRADPWIIRDDDGSYYFIASVPEFDRIELRHAKTIDGLRQATPKTLRYKHETGPMS
CHHHCCCCCEEEECCCCCEEEEEECCCCCCEEEHHHHHHHHHHHCCCHHEEEEECCCCEE
IDIWAPELHKIDGRWYIYFAASNKDVRFHNRMFVLGLEGDSPMTGQWQELGKLQSAQDAF
EEEECCHHEEECCEEEEEEEECCCCEEEECEEEEEEECCCCCCCCCHHHHHHHHCCCHHH
SLDATSFSLKGERYFIWAQQDKAKSYNTGLVIAKMLSPTQLSDNETIISEPLLDWERLGF
EECCEEEEECCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHCCE
KVNEGAAVLVKNGKVFVTYSASATDDRYAMGLLWADENADLLDPKSWHKSPSPVFTTEPS
EECCCCEEEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCEEECCCC
LNRFGPGHNSFVLAEDGKTELMFYHARNYLELQGTPLTDGNRHTYYRAIRWSADGFPVFD
HHHCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEEEECCCCCCEEC
NQQSDSQTLHRQGTQSR
CCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10657233 [H]