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The map label for this gene is yjfF [H]

Identifier: 117920520

GI number: 117920520

Start: 2484965

End: 2485927

Strand: Direct

Name: yjfF [H]

Synonym: Shewana3_2076

Alternate gene names: 117920520

Gene position: 2484965-2485927 (Clockwise)

Preceding gene: 117920519

Following gene: 117920521

Centisome position: 49.98

GC content: 50.05

Gene sequence:

>963_bases
ATGATAGCAAGACGTTTTATCCCGCTGTGGATCACCGCCTCATTGCTGCTGACCATGTTTCTGGTTGGCACCTTTCAGTT
TGACGGTTTTGCCAGTGGCCGAGTAGTCACCAACCTGTTGCGTGACAATGCATTCCTATTGATCACCGCATTAGGCATGA
CCTTAGTGATTATCTCTGGGGGTATCGATCTTTCGGTTGGTGCCGTCATCGCCTTAAGTGGGGTCGTCACCAGTTTATTG
ATCACCGAGTACCAATGGCATCCATTGTTGGCCTTTGTGGTTATCTTACCCCTCGGCACTCTGTTTGGCGCACTCATGGG
CACTATTATCCATGTGTATAAGTTGCAGCCATTTATTGTGACGCTTGCGGGCATGTTCCTGGCGCGGGGCTTAGCGACGA
CGCTCAGCGAAGAGTCGATTGCCATTGACCATCCATTTTACGATGCGGTGGCCGAGATGAGCATTGCACTGCCGGGCAAT
GGCGCACTCGATTTAAGCTCACTGATCTTTATCCTGTTCTTTGTGATTATCGCCGTGGTCATGCATTACACCCGTTTTGG
CACGAATGTGTATGCCATTGGTGGCAATCAACATTCCGCCGAACTAATGGGGATTTCCATCGCGAAAACCACCATCAGTA
TTTACGCCATCAGTAGCTTCCTAGCAACGCTGGCAGGTATTGTCTTTACCTTTTACACCTTCTCTGGCTATGCACTTGGC
GCCATTGGCGTCGAACTGGATGCCATTGCGGCCGTGGTCATTGGCGGCACCCTGTTAACTGGCGGCAGTGGCTTTGTGCT
CGGCACTGTGCTTGGGGTGATTTTGATGGGGGTGATCCAAACCTATATCACCTTCGATGGCAGCTTAAGCAGTTGGTGGA
CCAAGATAGTCATTGGCCTGTTACTGTTCTTCTTCATCCTGTTACAGAAACTCTTGAATGGACGCAAAACTCAACATGGA
TAA

Upstream 100 bases:

>100_bases
GCCAATTGTCGGCGCTGTTCAAATCCAAGCGCCATGCGGATGCCAAACCAGCAGAAAAGGCCACAAGTGCAAAAGCCAGT
GCCGCAACAGGAGAAAAACT

Downstream 100 bases:

>100_bases
TCGTCAATCTAACGTATCTGTCTTTAGGCGCTTTCCTTTGGTCTCTGGCTTACTCGCCGCATTGGCGCTGCCATTAGCGC
AAGCCGTGCCTGTGCTCGAA

Product: inner membrane ABC transporter permease YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIARRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVVTSLL
ITEYQWHPLLAFVVILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGN
GALDLSSLIFILFFVIIAVVMHYTRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALG
AIGVELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIGLLLFFFILLQKLLNGRKTQHG

Sequences:

>Translated_320_residues
MIARRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVVTSLL
ITEYQWHPLLAFVVILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGN
GALDLSSLIFILFFVIIAVVMHYTRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALG
AIGVELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIGLLLFFFILLQKLLNGRKTQHG
>Mature_320_residues
MIARRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISGGIDLSVGAVIALSGVVTSLL
ITEYQWHPLLAFVVILPLGTLFGALMGTIIHVYKLQPFIVTLAGMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGN
GALDLSSLIFILFFVIIAVVMHYTRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALG
AIGVELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIGLLLFFFILLQKLLNGRKTQHG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=57.0032573289902, Blast_Score=323, Evalue=8e-90,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=33.1168831168831, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790191, Length=284, Percent_Identity=35.5633802816901, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693152, Length=271, Percent_Identity=31.7343173431734, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=28.0936454849498, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787794, Length=247, Percent_Identity=29.9595141700405, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=34.5864661654135, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=31.0650887573964, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693214, Length=265, Percent_Identity=32.0754716981132, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34174; Mature: 34174

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEC
GIDLSVGAVIALSGVVTSLLITEYQWHPLLAFVVILPLGTLFGALMGTIIHVYKLQPFIV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGNGALDLSSLIFILFFVIIAVV
HHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHH
MHYTRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALG
HHHHHHCCEEEEECCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AIGVELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIGL
HHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLFFFILLQKLLNGRKTQHG
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIARRFIPLWITASLLLTMFLVGTFQFDGFASGRVVTNLLRDNAFLLITALGMTLVIISG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEC
GIDLSVGAVIALSGVVTSLLITEYQWHPLLAFVVILPLGTLFGALMGTIIHVYKLQPFIV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGMFLARGLATTLSEESIAIDHPFYDAVAEMSIALPGNGALDLSSLIFILFFVIIAVV
HHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHH
MHYTRFGTNVYAIGGNQHSAELMGISIAKTTISIYAISSFLATLAGIVFTFYTFSGYALG
HHHHHHCCEEEEECCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AIGVELDAIAAVVIGGTLLTGGSGFVLGTVLGVILMGVIQTYITFDGSLSSWWTKIVIGL
HHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLFFFILLQKLLNGRKTQHG
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]