Click here to switch to the map view.

The map label for this gene is rhaS [C]

Identifier: 117920375

GI number: 117920375

Start: 2294242

End: 2295132

Strand: Reverse

Name: rhaS [C]

Synonym: Shewana3_1930

Alternate gene names: 117920375

Gene position: 2295132-2294242 (Counterclockwise)

Preceding gene: 117920376

Following gene: 117920374

Centisome position: 46.16

GC content: 50.51

Gene sequence:

>891_bases
ATGCTAATGGTGACGACCTTGCGATACACGGCTAATGAACTCGAAATGCGCAGTTTTAAGCGTTTTGAGACCCAATTTGC
CCACTTAGGCTTTAATCATTTTCAAGCCATTGCCCCACTGCGCCCTTGGGTGCAGCGCTATTTTCATTTGCGTGTCGCGG
CGGATTTACCGCAACAAATCGCTCAAACCTTCTATCCCGATGGCGGCACAAGCCTGCATTTTTATTTGCCATCACCCGGT
ATTGGCGACACGCCTTCGGTGTATTTTTACTCGGGCCAGCAGCGGCATTGTCACAGCTTCGCGCGAGGTACCGAGCAAAT
TACGGTGCGTTTTCAGCCCGGTGGCGCCTTCCATTTACTGGGGGTTGAACTTGCCGCCATGCAGGCCGATACGACAGCAA
GCGTTATCGATGTGACCCAGTGGCCCATCGTTGGTTTAACAACGCTCTTATACCAACTCGTTGATACGCCCAAGCCAAGC
CAGCGTATCGCCCTTGTGGAACACTGGCTATTGCAACGAGCGCAGCTATTAGACTTAAGCTTATCGACGCGCATGAGCCT
AGTCCCCGCAACTCTGCCTCAACTCATTCAAACCCAAGCCAATTTGGAGACCTTTTACGGGCAACTCCCCATGAGTCGAC
GCCAATTTGAACGCAAATTTAAGCAGGAAACGGGTTTATCGCCTGCACAGTTATTGCAGCTGAATCGAGTGAAAATTGCC
CGCAACCTATTGAGTCAATCGCCGTCGCTTAGTCTCGCGCAGGTGGCCTTCGATTGTGGATTTTACGATCAAGCTCATCT
ACATCAGCACTTTTTACGGGTGATGCAGCAAACACCGGGGCAATATAAAAAACGCAAGATGTCGCAAATCTCCAATATAA
CGGCCGATTAA

Upstream 100 bases:

>100_bases
TTGGCGGATTTCATTTGAGCAGGACCACGGCTCTCCACTACTGAGTCACACTCAACACGGATGCAAACTGCATTAAGTTA
GCTTAAGCTAAACTCCCCCA

Downstream 100 bases:

>100_bases
TCCCTTAGATTCAAGCCTCAACTTACAGGAGGCTTTATGTCAGAACGTATTCCGCGCCAACAGATTTACCAACTCCAACC
CGAGCTCGCCAAGGCACTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLMVTTLRYTANELEMRSFKRFETQFAHLGFNHFQAIAPLRPWVQRYFHLRVAADLPQQIAQTFYPDGGTSLHFYLPSPG
IGDTPSVYFYSGQQRHCHSFARGTEQITVRFQPGGAFHLLGVELAAMQADTTASVIDVTQWPIVGLTTLLYQLVDTPKPS
QRIALVEHWLLQRAQLLDLSLSTRMSLVPATLPQLIQTQANLETFYGQLPMSRRQFERKFKQETGLSPAQLLQLNRVKIA
RNLLSQSPSLSLAQVAFDCGFYDQAHLHQHFLRVMQQTPGQYKKRKMSQISNITAD

Sequences:

>Translated_296_residues
MLMVTTLRYTANELEMRSFKRFETQFAHLGFNHFQAIAPLRPWVQRYFHLRVAADLPQQIAQTFYPDGGTSLHFYLPSPG
IGDTPSVYFYSGQQRHCHSFARGTEQITVRFQPGGAFHLLGVELAAMQADTTASVIDVTQWPIVGLTTLLYQLVDTPKPS
QRIALVEHWLLQRAQLLDLSLSTRMSLVPATLPQLIQTQANLETFYGQLPMSRRQFERKFKQETGLSPAQLLQLNRVKIA
RNLLSQSPSLSLAQVAFDCGFYDQAHLHQHFLRVMQQTPGQYKKRKMSQISNITAD
>Mature_296_residues
MLMVTTLRYTANELEMRSFKRFETQFAHLGFNHFQAIAPLRPWVQRYFHLRVAADLPQQIAQTFYPDGGTSLHFYLPSPG
IGDTPSVYFYSGQQRHCHSFARGTEQITVRFQPGGAFHLLGVELAAMQADTTASVIDVTQWPIVGLTTLLYQLVDTPKPS
QRIALVEHWLLQRAQLLDLSLSTRMSLVPATLPQLIQTQANLETFYGQLPMSRRQFERKFKQETGLSPAQLLQLNRVKIA
RNLLSQSPSLSLAQVAFDCGFYDQAHLHQHFLRVMQQTPGQYKKRKMSQISNITAD

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33765; Mature: 33765

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMVTTLRYTANELEMRSFKRFETQFAHLGFNHFQAIAPLRPWVQRYFHLRVAADLPQQI
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTFYPDGGTSLHFYLPSPGIGDTPSVYFYSGQQRHCHSFARGTEQITVRFQPGGAFHLL
HHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEEEECCCCEEEEH
GVELAAMQADTTASVIDVTQWPIVGLTTLLYQLVDTPKPSQRIALVEHWLLQRAQLLDLS
HHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LSTRMSLVPATLPQLIQTQANLETFYGQLPMSRRQFERKFKQETGLSPAQLLQLNRVKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RNLLSQSPSLSLAQVAFDCGFYDQAHLHQHFLRVMQQTPGQYKKRKMSQISNITAD
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLMVTTLRYTANELEMRSFKRFETQFAHLGFNHFQAIAPLRPWVQRYFHLRVAADLPQQI
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTFYPDGGTSLHFYLPSPGIGDTPSVYFYSGQQRHCHSFARGTEQITVRFQPGGAFHLL
HHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEEEECCCCEEEEH
GVELAAMQADTTASVIDVTQWPIVGLTTLLYQLVDTPKPSQRIALVEHWLLQRAQLLDLS
HHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LSTRMSLVPATLPQLIQTQANLETFYGQLPMSRRQFERKFKQETGLSPAQLLQLNRVKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RNLLSQSPSLSLAQVAFDCGFYDQAHLHQHFLRVMQQTPGQYKKRKMSQISNITAD
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA