| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is hypF2 [H]
Identifier: 117920320
GI number: 117920320
Start: 2220113
End: 2222620
Strand: Reverse
Name: hypF2 [H]
Synonym: Shewana3_1875
Alternate gene names: 117920320
Gene position: 2222620-2220113 (Counterclockwise)
Preceding gene: 117920321
Following gene: 117920318
Centisome position: 44.7
GC content: 52.19
Gene sequence:
>2508_bases ATGCAGATGCAGCCAGATAAGCGAAGAATACCGAGATTGAAAAAAGCCACCTCACCCGCCAATCAAACCGAGCAACTCGA GCGCCGCCAGCTGCATATCACGGGCATTGTGCAAGGTGTGGGCTTTCGCCCCTTTGTTTACCGCTGGGCGAGTGAGCTTA AATTAACTGGCACTGTGCTAAATAATGCCAATGGCGTGATGATTGAGCTGCAAGGCCCCACCGCAAACTTAGATAACTTT GTGCGTGAGTTAACCACCAATCCGCCGCCGCTGGCGCGCATCGACCAGATTACCCAGAGTCCGTTAGCGGTAAAGCTTGA AGAGACTAGCTTCGATATTATTCAAAGTGATAGCCAAAGTGATGAATCTGGTGAGCATAACTTTGCAGCGCTGGTTGCCG TATCGGCCGACAAGAGTACCTGTCAGGATTGCTTAAGCGATATGCATAACCCGCAGGACCGCCACTTTGGCTATGCCTTT ACCAATTGCACCAACTGCGGCCCAAGATACACCATTATCAACGCCTTACCCTACGATCGCCATCATACCGCCATGGCGGA TTTCGCCATGTGCCCCGACTGCGCCAAGGCTTATCAAGATCCGCTAAATCGTAGATACCACGCCCAGCCTGTGAGTTGCC CTAAGTGTGGTCCTCAATTGAGTTTAAAATCACCTCAAGGCGAGTTACTTGCACCTAATTCCTTGTCCGCTTTGCAAGAT AACAGCCTAGCAGTATTGTCGGCGGCGGCCGAAAAACTGGCCCAAGGGCAGATTCTTGCGATAAAGGGCTTAGGTGGCTT CCACTTAATGTGCGATGCAACCAACACCCTAGCGGTCAATCAATTAAGGCAACGCAAGCAACGAAAAGCCAAGCCACTAG CGGTGATGATGCCGAGCATCGAAGTGGCAAAACGCTATGTAACGGGCACACAGGTAGAGTGGCAAACCTTAAGCGCGCAG GAGCGGCCCATCGTACTAATGCAGGCGCAGGATAAACACAATCTGAGCCCTGAGATTGCGCCTAATATCCCAAAGCTCGG GATATTTTTGCCCTACACACCGCTGCATCATTTACTGCTCGGGCAATTTAACGGCCCACTGGTCGCGACCAGTGCGAATG TCTCTGGCGAACCGATTATCACCGATTGTGATGAGCTTATCAGCCAACTAGGCCATGTGGTGGATGCCATAGTCGATCAC AACCGCCCCATACTCAACGGCTGTGATGACAGCGTGGTGCAACTTATCCAACCGCCAAACGGCTGTGCGCCACAGGTACA AGTGCTGCGTTTAGCGCGGGGATATGCGCCATTAAGCTTCCCGTTACCCAAACCGCTGAGTCACTCCATTCTTGCCGTGG GCGCCCAACAAAAAAATGCCATTGCTTTAGGTTTTGGCTCGAATGTGTTTTTAAGCCCGCATATTGGCGATCTCTTTAGT GTCAGCGCCGAGCAGTACTTCGAGCGAACCTTGGCGACCTTCGCCCGTCTGTATCATTTCAGCCCCGAGCTGATTGTCCA CGATAAGCACCCAGACTACGCACCATCGCGCTGGGCAGAGACGCAGCAACAGCACAGCCTTGATACACAAAGCCAAGACA CGCAGCCAATCCAAACCTTAAGTGTGCAGCATCACCACGCCCATGTGCTCAGCGTGATGGCCATCAATCAATATCAAGAT CCAGTATTAGGCTTTAGTTTCGATGGCACAGGGCTTGGAAACGATGGCAGCCTCTGGGGCGGAGAGGTCTTACTGACCAC CCTTAACGGCGCCGAGCGGATTGCCCATTTCGAGGCTATTCCCTTGCTCGGTGGAGAACAGGCAATTAAGCAACCTGTGC GTTTGCTGCTGGCATTACTGTTTCAGCAGATGAGTCTCGAGGAAGTGCAAGCCCTTAAGTTGCCGATTCTGACAACCTTA AGCCCCATCACCTTAAGCAATCTGCATCGGATCTGGCAAAACGGCCATGGGATTAATAGCTCATCGGTGGGACGCTTGTT CGATGCCCTCGCCTGCGCCTTAGGCTTTATCGACACCACTCAATTTGAAGGTCAAGCGGGTATGTTAATTGAAGCAGCAG CAAGACGGGCCGATGCCAAACAACTGCCAACGCTGATGCTCGACTTACCCTTGGAAATCTCAGATATGCCCAGTGATAGC TCGATACACGAACCGCATATCTGGCGCAGTAGCCAGCTCTTTAAGCAGATAATCACGCTAATCACCGAAGCGCCGCTCAC TGACGTTCGGCAAGCGCAGTTAGCCCGCGCCTTTTTACATTGTGTGGGGGATGCCATTTGTGGTTATGCCGCGCGCTATC CAGCCCTGCCCGTGGTGCTGTGCGGCGGAGTGTTTCAAAATCAATATTTGCTTGAATATTGCCTCGGTAAACTGCACCTA CAGGGCAATACCGTGCTGCCTAACAAACATATTCCCGTCAACGATGGCGGTATTGCCCTCGGGCAGCTTTGGTATGGTAT CCATCAAAGCGCAAGCAATAACCAGTGA
Upstream 100 bases:
>100_bases TGAAGCAGCGGCAGTTAAATAGCCTTTAACAACACCCGCTCACCGCTAACCTTACATTCAGATAGCGCTAACGCATGGAA GATAAAATGTTTTATCTTCC
Downstream 100 bases:
>100_bases TGGTTAAGACTCAAGCTGACGCATAAAAGCTTTCATTGCGGGCGTAATACTGTGCTTACGGGTCATAAAGACCGTTTGCC CTGAACTGACACCGTCCAAA
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 835; Mature: 835
Protein sequence:
>835_residues MQMQPDKRRIPRLKKATSPANQTEQLERRQLHITGIVQGVGFRPFVYRWASELKLTGTVLNNANGVMIELQGPTANLDNF VRELTTNPPPLARIDQITQSPLAVKLEETSFDIIQSDSQSDESGEHNFAALVAVSADKSTCQDCLSDMHNPQDRHFGYAF TNCTNCGPRYTIINALPYDRHHTAMADFAMCPDCAKAYQDPLNRRYHAQPVSCPKCGPQLSLKSPQGELLAPNSLSALQD NSLAVLSAAAEKLAQGQILAIKGLGGFHLMCDATNTLAVNQLRQRKQRKAKPLAVMMPSIEVAKRYVTGTQVEWQTLSAQ ERPIVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPLHHLLLGQFNGPLVATSANVSGEPIITDCDELISQLGHVVDAIVDH NRPILNGCDDSVVQLIQPPNGCAPQVQVLRLARGYAPLSFPLPKPLSHSILAVGAQQKNAIALGFGSNVFLSPHIGDLFS VSAEQYFERTLATFARLYHFSPELIVHDKHPDYAPSRWAETQQQHSLDTQSQDTQPIQTLSVQHHHAHVLSVMAINQYQD PVLGFSFDGTGLGNDGSLWGGEVLLTTLNGAERIAHFEAIPLLGGEQAIKQPVRLLLALLFQQMSLEEVQALKLPILTTL SPITLSNLHRIWQNGHGINSSSVGRLFDALACALGFIDTTQFEGQAGMLIEAAARRADAKQLPTLMLDLPLEISDMPSDS SIHEPHIWRSSQLFKQIITLITEAPLTDVRQAQLARAFLHCVGDAICGYAARYPALPVVLCGGVFQNQYLLEYCLGKLHL QGNTVLPNKHIPVNDGGIALGQLWYGIHQSASNNQ
Sequences:
>Translated_835_residues MQMQPDKRRIPRLKKATSPANQTEQLERRQLHITGIVQGVGFRPFVYRWASELKLTGTVLNNANGVMIELQGPTANLDNF VRELTTNPPPLARIDQITQSPLAVKLEETSFDIIQSDSQSDESGEHNFAALVAVSADKSTCQDCLSDMHNPQDRHFGYAF TNCTNCGPRYTIINALPYDRHHTAMADFAMCPDCAKAYQDPLNRRYHAQPVSCPKCGPQLSLKSPQGELLAPNSLSALQD NSLAVLSAAAEKLAQGQILAIKGLGGFHLMCDATNTLAVNQLRQRKQRKAKPLAVMMPSIEVAKRYVTGTQVEWQTLSAQ ERPIVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPLHHLLLGQFNGPLVATSANVSGEPIITDCDELISQLGHVVDAIVDH NRPILNGCDDSVVQLIQPPNGCAPQVQVLRLARGYAPLSFPLPKPLSHSILAVGAQQKNAIALGFGSNVFLSPHIGDLFS VSAEQYFERTLATFARLYHFSPELIVHDKHPDYAPSRWAETQQQHSLDTQSQDTQPIQTLSVQHHHAHVLSVMAINQYQD PVLGFSFDGTGLGNDGSLWGGEVLLTTLNGAERIAHFEAIPLLGGEQAIKQPVRLLLALLFQQMSLEEVQALKLPILTTL SPITLSNLHRIWQNGHGINSSSVGRLFDALACALGFIDTTQFEGQAGMLIEAAARRADAKQLPTLMLDLPLEISDMPSDS SIHEPHIWRSSQLFKQIITLITEAPLTDVRQAQLARAFLHCVGDAICGYAARYPALPVVLCGGVFQNQYLLEYCLGKLHL QGNTVLPNKHIPVNDGGIALGQLWYGIHQSASNNQ >Mature_835_residues MQMQPDKRRIPRLKKATSPANQTEQLERRQLHITGIVQGVGFRPFVYRWASELKLTGTVLNNANGVMIELQGPTANLDNF VRELTTNPPPLARIDQITQSPLAVKLEETSFDIIQSDSQSDESGEHNFAALVAVSADKSTCQDCLSDMHNPQDRHFGYAF TNCTNCGPRYTIINALPYDRHHTAMADFAMCPDCAKAYQDPLNRRYHAQPVSCPKCGPQLSLKSPQGELLAPNSLSALQD NSLAVLSAAAEKLAQGQILAIKGLGGFHLMCDATNTLAVNQLRQRKQRKAKPLAVMMPSIEVAKRYVTGTQVEWQTLSAQ ERPIVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPLHHLLLGQFNGPLVATSANVSGEPIITDCDELISQLGHVVDAIVDH NRPILNGCDDSVVQLIQPPNGCAPQVQVLRLARGYAPLSFPLPKPLSHSILAVGAQQKNAIALGFGSNVFLSPHIGDLFS VSAEQYFERTLATFARLYHFSPELIVHDKHPDYAPSRWAETQQQHSLDTQSQDTQPIQTLSVQHHHAHVLSVMAINQYQD PVLGFSFDGTGLGNDGSLWGGEVLLTTLNGAERIAHFEAIPLLGGEQAIKQPVRLLLALLFQQMSLEEVQALKLPILTTL SPITLSNLHRIWQNGHGINSSSVGRLFDALACALGFIDTTQFEGQAGMLIEAAARRADAKQLPTLMLDLPLEISDMPSDS SIHEPHIWRSSQLFKQIITLITEAPLTDVRQAQLARAFLHCVGDAICGYAARYPALPVVLCGGVFQNQYLLEYCLGKLHL QGNTVLPNKHIPVNDGGIALGQLWYGIHQSASNNQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=803, Percent_Identity=35.3673723536737, Blast_Score=381, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 91549; Mature: 91549
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQMQPDKRRIPRLKKATSPANQTEQLERRQLHITGIVQGVGFRPFVYRWASELKLTGTVL CCCCCCHHHCCHHHHHCCCCCHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHEEEEEEE NNANGVMIELQGPTANLDNFVRELTTNPPPLARIDQITQSPLAVKLEETSFDIIQSDSQS ECCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECCCCHHHCCCCCC DESGEHNFAALVAVSADKSTCQDCLSDMHNPQDRHFGYAFTNCTNCGPRYTIINALPYDR CCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCC HHTAMADFAMCPDCAKAYQDPLNRRYHAQPVSCPKCGPQLSLKSPQGELLAPNSLSALQD CHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHCC NSLAVLSAAAEKLAQGQILAIKGLGGFHLMCDATNTLAVNQLRQRKQRKAKPLAVMMPSI CCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCH EVAKRYVTGTQVEWQTLSAQERPIVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPLHHLLL HHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHH GQFNGPLVATSANVSGEPIITDCDELISQLGHVVDAIVDHNRPILNGCDDSVVQLIQPPN HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC GCAPQVQVLRLARGYAPLSFPLPKPLSHSILAVGAQQKNAIALGFGSNVFLSPHIGDLFS CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCEEECCCCCHHHH VSAEQYFERTLATFARLYHFSPELIVHDKHPDYAPSRWAETQQQHSLDTQSQDTQPIQTL HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH SVQHHHAHVLSVMAINQYQDPVLGFSFDGTGLGNDGSLWGGEVLLTTLNGAERIAHFEAI HCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHC PLLGGEQAIKQPVRLLLALLFQQMSLEEVQALKLPILTTLSPITLSNLHRIWQNGHGINS CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCCCC SSVGRLFDALACALGFIDTTQFEGQAGMLIEAAARRADAKQLPTLMLDLPLEISDMPSDS HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHCCEEEEECCCCCCCCCCCC SIHEPHIWRSSQLFKQIITLITEAPLTDVRQAQLARAFLHCVGDAICGYAARYPALPVVL CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH CGGVFQNQYLLEYCLGKLHLQGNTVLPNKHIPVNDGGIALGQLWYGIHQSASNNQ HCCHHHHHHHHHHHHHHEEECCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQMQPDKRRIPRLKKATSPANQTEQLERRQLHITGIVQGVGFRPFVYRWASELKLTGTVL CCCCCCHHHCCHHHHHCCCCCHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHEEEEEEE NNANGVMIELQGPTANLDNFVRELTTNPPPLARIDQITQSPLAVKLEETSFDIIQSDSQS ECCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECCCCHHHCCCCCC DESGEHNFAALVAVSADKSTCQDCLSDMHNPQDRHFGYAFTNCTNCGPRYTIINALPYDR CCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCC HHTAMADFAMCPDCAKAYQDPLNRRYHAQPVSCPKCGPQLSLKSPQGELLAPNSLSALQD CHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHCC NSLAVLSAAAEKLAQGQILAIKGLGGFHLMCDATNTLAVNQLRQRKQRKAKPLAVMMPSI CCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCH EVAKRYVTGTQVEWQTLSAQERPIVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPLHHLLL HHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHH GQFNGPLVATSANVSGEPIITDCDELISQLGHVVDAIVDHNRPILNGCDDSVVQLIQPPN HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC GCAPQVQVLRLARGYAPLSFPLPKPLSHSILAVGAQQKNAIALGFGSNVFLSPHIGDLFS CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCEEECCCCCHHHH VSAEQYFERTLATFARLYHFSPELIVHDKHPDYAPSRWAETQQQHSLDTQSQDTQPIQTL HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH SVQHHHAHVLSVMAINQYQDPVLGFSFDGTGLGNDGSLWGGEVLLTTLNGAERIAHFEAI HCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHC PLLGGEQAIKQPVRLLLALLFQQMSLEEVQALKLPILTTLSPITLSNLHRIWQNGHGINS CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCCCC SSVGRLFDALACALGFIDTTQFEGQAGMLIEAAARRADAKQLPTLMLDLPLEISDMPSDS HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHCCEEEEECCCCCCCCCCCC SIHEPHIWRSSQLFKQIITLITEAPLTDVRQAQLARAFLHCVGDAICGYAARYPALPVVL CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH CGGVFQNQYLLEYCLGKLHLQGNTVLPNKHIPVNDGGIALGQLWYGIHQSASNNQ HCCHHHHHHHHHHHHHHEEECCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]