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The map label for this gene is fdhD [H]

Identifier: 117920318

GI number: 117920318

Start: 2218209

End: 2219069

Strand: Reverse

Name: fdhD [H]

Synonym: Shewana3_1873

Alternate gene names: 117920318

Gene position: 2219069-2218209 (Counterclockwise)

Preceding gene: 117920320

Following gene: 117920317

Centisome position: 44.63

GC content: 51.57

Gene sequence:

>861_bases
GTGCTAACTCACCCACTCGATTCGGCGAATGACCCAAGGCTCTGCCCTGAATCTCAACACAGCCCAAACGCGGCACAACA
TGCTAGTGCCCGCTACTCGCATCTGGTTGAAGAGGTCGCTGCCGCCATCAACCTCAATGGCATCAGCTATGCGGTGATGA
TGATAACGCCCGATCACTTTGAGGACTTTGTGATTGGCTTCTTATTCGCCGAAGGCATTATCAGCCAAGATGAAGATGTG
CATGAAATTGATATCACTCCTGTCCAAGACGGCGTAATGCTCGATGTCATCTTAGCTAATCGCTGTTTAATCGCCCTTAA
ACAACGTAAAAGACGGCTCGTCGGCGCAACTGGCTGCGGGATCTGCGGTGTGGAAGCCCTAGGACATGCCCTACCAGATT
TACCGCCATTACCCGCCTGCGCTCCCTTGGTGCTTGAGCATGTCGACTGCCTCAAACAGCAAATACATACACATCAGCTT
AAGGCGCAGCGCAGCGGCGCTATCCATGCGGCTTTTGCCTTAGATGAGGCTGGCAATATCCTTGAATGCCGTGAAGATAT
CGGTCGGCACAATGCGTTAGATAAGCTGATTGGCGCGCTGCTGCGGCAAAAGCGCAGCGCCAAGGCGCTGCTGATGACCA
GTCGCTGCAGCAGCGAGTTGATCCAAAAAGCGGTGCGTTATGGTGCCAATCATTTGATTAGTCTCGCGTCACCCAGCCAG
CTCGCGGTGAAATTGGCGCTGAAATACCAGCTTAACCTTGTCCATATTCCTAAGTTTGATCCGCCAATCCACTACTCCAT
ATTTGATGAAAGCCTTGCATGCCAATGCAATAGCGGAGAATTTTATGCCTGTTCATATTGA

Upstream 100 bases:

>100_bases
TTTAATAGAAATCTTCTATCAATCCATAAAATAGTTTGATTGGCCTAGCGCGTAAGCCCTCTCTAGAATGTGATCAACAT
CCAGTTTCAGGTTGAAATGC

Downstream 100 bases:

>100_bases
AAAACCGACCAAAGCCGGCGGCTTCCCCTCACTGCAATCGACCTTAAAGCATGTGCTGCGCAGCCAAAAGACCCAGCAAA
ATATCAAAAACCTGCTCAGG

Product: formate dehydrogenase family accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MLTHPLDSANDPRLCPESQHSPNAAQHASARYSHLVEEVAAAINLNGISYAVMMITPDHFEDFVIGFLFAEGIISQDEDV
HEIDITPVQDGVMLDVILANRCLIALKQRKRRLVGATGCGICGVEALGHALPDLPPLPACAPLVLEHVDCLKQQIHTHQL
KAQRSGAIHAAFALDEAGNILECREDIGRHNALDKLIGALLRQKRSAKALLMTSRCSSELIQKAVRYGANHLISLASPSQ
LAVKLALKYQLNLVHIPKFDPPIHYSIFDESLACQCNSGEFYACSY

Sequences:

>Translated_286_residues
MLTHPLDSANDPRLCPESQHSPNAAQHASARYSHLVEEVAAAINLNGISYAVMMITPDHFEDFVIGFLFAEGIISQDEDV
HEIDITPVQDGVMLDVILANRCLIALKQRKRRLVGATGCGICGVEALGHALPDLPPLPACAPLVLEHVDCLKQQIHTHQL
KAQRSGAIHAAFALDEAGNILECREDIGRHNALDKLIGALLRQKRSAKALLMTSRCSSELIQKAVRYGANHLISLASPSQ
LAVKLALKYQLNLVHIPKFDPPIHYSIFDESLACQCNSGEFYACSY
>Mature_286_residues
MLTHPLDSANDPRLCPESQHSPNAAQHASARYSHLVEEVAAAINLNGISYAVMMITPDHFEDFVIGFLFAEGIISQDEDV
HEIDITPVQDGVMLDVILANRCLIALKQRKRRLVGATGCGICGVEALGHALPDLPPLPACAPLVLEHVDCLKQQIHTHQL
KAQRSGAIHAAFALDEAGNILECREDIGRHNALDKLIGALLRQKRSAKALLMTSRCSSELIQKAVRYGANHLISLASPSQ
LAVKLALKYQLNLVHIPKFDPPIHYSIFDESLACQCNSGEFYACSY

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=230, Percent_Identity=36.5217391304348, Blast_Score=150, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 31266; Mature: 31266

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTHPLDSANDPRLCPESQHSPNAAQHASARYSHLVEEVAAAINLNGISYAVMMITPDHF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
EDFVIGFLFAEGIISQDEDVHEIDITPVQDGVMLDVILANRCLIALKQRKRRLVGATGCG
HHHHHHHHHHHHHCCCCCCCEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ICGVEALGHALPDLPPLPACAPLVLEHVDCLKQQIHTHQLKAQRSGAIHAAFALDEAGNI
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
LECREDIGRHNALDKLIGALLRQKRSAKALLMTSRCSSELIQKAVRYGANHLISLASPSQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHH
LAVKLALKYQLNLVHIPKFDPPIHYSIFDESLACQCNSGEFYACSY
HHHHEEEEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCEEEECC
>Mature Secondary Structure
MLTHPLDSANDPRLCPESQHSPNAAQHASARYSHLVEEVAAAINLNGISYAVMMITPDHF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
EDFVIGFLFAEGIISQDEDVHEIDITPVQDGVMLDVILANRCLIALKQRKRRLVGATGCG
HHHHHHHHHHHHHCCCCCCCEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ICGVEALGHALPDLPPLPACAPLVLEHVDCLKQQIHTHQLKAQRSGAIHAAFALDEAGNI
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
LECREDIGRHNALDKLIGALLRQKRSAKALLMTSRCSSELIQKAVRYGANHLISLASPSQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHH
LAVKLALKYQLNLVHIPKFDPPIHYSIFDESLACQCNSGEFYACSY
HHHHEEEEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]