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The map label for this gene is ydjR [C]

Identifier: 117919836

GI number: 117919836

Start: 1603063

End: 1603824

Strand: Reverse

Name: ydjR [C]

Synonym: Shewana3_1388

Alternate gene names: 117919836

Gene position: 1603824-1603063 (Counterclockwise)

Preceding gene: 117919837

Following gene: 117919821

Centisome position: 32.26

GC content: 44.09

Gene sequence:

>762_bases
TTGAATCCCAATATCCGGATCATCCGTTATGAAGAATGCGAATCGAGCTTATGGAAAAACGGTGGTGGCAGCACTAAGCA
ACTGTTGATATGGCCAAAGGGGGCAGATCTCAGCAACTTTGATTTTAGGATCAGCATCGCCACCATTTCGAGCGATGCTC
CCTTCTCACTCTTCCACGGCATCGATAGACAGCTATGTATATTGGAAGGTGAAGGGGTAAGACTACACATCAAGGGGAAT
GATTTAGGGCAATCGGATGAAATCGTTCTGCGCCCGAACGATCCTCCATTGTGCTTTAGCGGGGAAACTCAAATAGAGAG
CAAACTATTAGATAGCCAGATCCTAGACTTTAATGTGATGACGAGGCGCGGAAAATACCGCTCACGTATTGAACCGCTGG
AATTGGATGGCCCCTTCAGTCTTGAACCCACCAAAACCAGTCGTGAAGATAATGTCCATCAACAAACGAACCCACACAAC
AACGAACTACAACAATGGTTATTATGCCTTGAACCGCTGAACCTTTTTTATCAGGGACAAACTATTCAACTTAAACGTTA
CGATATGATGCAATGCCTACAATGGCCAGATTCAAAAACGCAGCTGTCAGAAATACATCCACAAGAAGGTACTGCTCTCA
AAGCACCCCTTTCAAACGCTGAACGACCAGAAGTTGAGCATACAGATATAAAAAACCAGCACCGAATTCGCAATAAACAA
TGTCAGGTACTGCGCATCATTATAATAAGGAACGATATATGA

Upstream 100 bases:

>100_bases
TTTAGCTGTAAACGCAGTAGCTGCGATACGCCACTGCATTATGCGCCGAAGTAGGTATCCTCTGTACTGAAACAATCCAT
AATAAAAAGAGAAGCTTAAA

Downstream 100 bases:

>100_bases
AGAGTTAAGTTATAGTGTCTAGAGAAGCACTTTGAGACGCTTCAAAAATAGTAAATCCTTACCACCGATTGCAAAACTGA
TACCCAAAAGAGGCGTAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNPNIRIIRYEECESSLWKNGGGSTKQLLIWPKGADLSNFDFRISIATISSDAPFSLFHGIDRQLCILEGEGVRLHIKGN
DLGQSDEIVLRPNDPPLCFSGETQIESKLLDSQILDFNVMTRRGKYRSRIEPLELDGPFSLEPTKTSREDNVHQQTNPHN
NELQQWLLCLEPLNLFYQGQTIQLKRYDMMQCLQWPDSKTQLSEIHPQEGTALKAPLSNAERPEVEHTDIKNQHRIRNKQ
CQVLRIIIIRNDI

Sequences:

>Translated_253_residues
MNPNIRIIRYEECESSLWKNGGGSTKQLLIWPKGADLSNFDFRISIATISSDAPFSLFHGIDRQLCILEGEGVRLHIKGN
DLGQSDEIVLRPNDPPLCFSGETQIESKLLDSQILDFNVMTRRGKYRSRIEPLELDGPFSLEPTKTSREDNVHQQTNPHN
NELQQWLLCLEPLNLFYQGQTIQLKRYDMMQCLQWPDSKTQLSEIHPQEGTALKAPLSNAERPEVEHTDIKNQHRIRNKQ
CQVLRIIIIRNDI
>Mature_253_residues
MNPNIRIIRYEECESSLWKNGGGSTKQLLIWPKGADLSNFDFRISIATISSDAPFSLFHGIDRQLCILEGEGVRLHIKGN
DLGQSDEIVLRPNDPPLCFSGETQIESKLLDSQILDFNVMTRRGKYRSRIEPLELDGPFSLEPTKTSREDNVHQQTNPHN
NELQQWLLCLEPLNLFYQGQTIQLKRYDMMQCLQWPDSKTQLSEIHPQEGTALKAPLSNAERPEVEHTDIKNQHRIRNKQ
CQVLRIIIIRNDI

Specific function: Unknown

COG id: COG3758

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydjR [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR010282 [H]

Pfam domain/function: PF05962 HutD [H]

EC number: NA

Molecular weight: Translated: 29171; Mature: 29171

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPNIRIIRYEECESSLWKNGGGSTKQLLIWPKGADLSNFDFRISIATISSDAPFSLFHG
CCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHC
IDRQLCILEGEGVRLHIKGNDLGQSDEIVLRPNDPPLCFSGETQIESKLLDSQILDFNVM
CCCEEEEEECCCEEEEECCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHCEEEE
TRRGKYRSRIEPLELDGPFSLEPTKTSREDNVHQQTNPHNNELQQWLLCLEPLNLFYQGQ
ECCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCC
TIQLKRYDMMQCLQWPDSKTQLSEIHPQEGTALKAPLSNAERPEVEHTDIKNQHRIRNKQ
EEEEEHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCC
CQVLRIIIIRNDI
EEEEEEEEEECCC
>Mature Secondary Structure
MNPNIRIIRYEECESSLWKNGGGSTKQLLIWPKGADLSNFDFRISIATISSDAPFSLFHG
CCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHC
IDRQLCILEGEGVRLHIKGNDLGQSDEIVLRPNDPPLCFSGETQIESKLLDSQILDFNVM
CCCEEEEEECCCEEEEECCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHCEEEE
TRRGKYRSRIEPLELDGPFSLEPTKTSREDNVHQQTNPHNNELQQWLLCLEPLNLFYQGQ
ECCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCC
TIQLKRYDMMQCLQWPDSKTQLSEIHPQEGTALKAPLSNAERPEVEHTDIKNQHRIRNKQ
EEEEEHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCC
CQVLRIIIIRNDI
EEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2203753 [H]