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The map label for this gene is yclF [H]

Identifier: 117919821

GI number: 117919821

Start: 1585825

End: 1587294

Strand: Reverse

Name: yclF [H]

Synonym: Shewana3_1373

Alternate gene names: 117919821

Gene position: 1587294-1585825 (Counterclockwise)

Preceding gene: 117919836

Following gene: 117919818

Centisome position: 31.92

GC content: 47.41

Gene sequence:

>1470_bases
ATGAGCGTAGCAAAACCACAAGGGACGATGCTTGGTCATCCCAAGGGCCTGTTCCTTCTATTTACAACAGAACTGTGGGA
ACGTTTTAGTTATTACGCAATGCGCGCCATTTTGGTGCTGTATTTAGTGGACAAAGTGCAGAGTGAAGGGGGACACGGTT
TAGGTTGGACGCAAGCCGATGCGATTTCACTCTATGGTACATTCACTGGCCTAGTTTACTTAACGCCGCTTATCGGTGGC
TGGTTAGCAGACACCTTTTTAGGCCAACGCCGCGCGATTATGATTGGCGGTACTTTAATGGCCGCAGGTCAATTTATTCT
CGGTACGCCGCACGCTTGGGTACCTGGTATGGAAACCGAAGTTTTCTATGTCGGCTTAGGAACCTTGATCTTAGGTAACG
GCCTATTCAAGCCGAATATCTCTACCATGGTAGGCGATCTGTACGAAGAAGGTGATCATCGCCGTGACGGTGCATTCACC
ATTTTCTATATGGGGATCAACGTCGGTGCTTTCCTATCGGGTATTATCGTAGGTTCTGTGGTGGCGGCTTATGATGGCAA
CTTCCAAGCCGGCTTTATCTGTGCCGGTATTGGTATGATCCTGTCATTAATCATCCAACTTGTGTTTGCGCAAAAGCTAC
TTGGTGATATCGGTAGAACCCCAGCTGCTAAGCTTGAAAAGCAAAAAGCGGCAGAAAAAGGCGAAGTTCGCAAAGAGCCA
CTCACCAAAGTTGAGCGTGACCGTATTAAAGTCATCATGGTGATGGGCTTATTTACCATCATCTTCTGGGCGGGGTTTGA
ACAAGCTGGCGGCTTGATGAACCTGTTCACGAATGACTTTACCGACCGTATGATCGGTACTTGGGAAGTTCCTACCACTT
GGTTCCAATCCTTGAACGCGATGTTTATCGTGATTTTTGCACCTGTTGTAGCCTCGATTTGGGTACGCTTAGGTAAGAAT
GAACCAAACTCGCCTGTTAAGTTTGCTTTAGGCTTAGTGCTATTAGCCGTTGGCTTCTTATTCATGATCGGTGCCGTTGT
TGAGATGGGTGGCGATGCTTCAGCGAAATCGAGCATGTGGTGGTTAGTCGGTGCTTATTTCTTCCACACCATGGGTGAGC
TTTGCTTATCACCAATTGGTTTATCTATGGTGACTAAGCTAGCCCCATTACGTATAGCTTCATTAATGATGGGTTCTTGG
TTCCTGTTCGTTGCTGCAGCTAACAAGATTGGTGGCGTAGTGGGTTCATTCATCGGCCACGGCGGTGAAAAAGAAGAACA
ACTCGCCAATGCAATGGCCATTTTCTCGGGTATCGCGATTACTGCAGCACTTTCTGGTGTGGTCTTATACTTCATGGCCG
ACAAACTTGTGGATTGGATGCATGGTGCAGAAAGCAAGCATCACAACGAAGCTGAAGCGTTAGAAGATGAAATCGCCGTT
ACCGGTGAGCATGAAGCGATCAAACGTTAA

Upstream 100 bases:

>100_bases
CACAGTGGATAAATGAGAAGAGCAACAACCATTTTTCTGTGGTGACATCATCCTGTTACAGGGGCGCCACAGGCAATCAC
GAGCTTAAGGTGGAAACTTC

Downstream 100 bases:

>100_bases
TTTGCGTTAGGTTCAATCAATAAAAAACGCTGCCATGGCAGCGTTTTTTATTTGTAACTTAGATAATTAACATAAGCGTC
GAGCTAATTTCCGATAACAT

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MSVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQADAISLYGTFTGLVYLTPLIGG
WLADTFLGQRRAIMIGGTLMAAGQFILGTPHAWVPGMETEVFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFT
IFYMGINVGAFLSGIIVGSVVAAYDGNFQAGFICAGIGMILSLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEP
LTKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNAMFIVIFAPVVASIWVRLGKN
EPNSPVKFALGLVLLAVGFLFMIGAVVEMGGDASAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSW
FLFVAAANKIGGVVGSFIGHGGEKEEQLANAMAIFSGIAITAALSGVVLYFMADKLVDWMHGAESKHHNEAEALEDEIAV
TGEHEAIKR

Sequences:

>Translated_489_residues
MSVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQADAISLYGTFTGLVYLTPLIGG
WLADTFLGQRRAIMIGGTLMAAGQFILGTPHAWVPGMETEVFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFT
IFYMGINVGAFLSGIIVGSVVAAYDGNFQAGFICAGIGMILSLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEP
LTKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNAMFIVIFAPVVASIWVRLGKN
EPNSPVKFALGLVLLAVGFLFMIGAVVEMGGDASAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSW
FLFVAAANKIGGVVGSFIGHGGEKEEQLANAMAIFSGIAITAALSGVVLYFMADKLVDWMHGAESKHHNEAEALEDEIAV
TGEHEAIKR
>Mature_488_residues
SVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQADAISLYGTFTGLVYLTPLIGGW
LADTFLGQRRAIMIGGTLMAAGQFILGTPHAWVPGMETEVFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTI
FYMGINVGAFLSGIIVGSVVAAYDGNFQAGFICAGIGMILSLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEPL
TKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNAMFIVIFAPVVASIWVRLGKNE
PNSPVKFALGLVLLAVGFLFMIGAVVEMGGDASAKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSWF
LFVAAANKIGGVVGSFIGHGGEKEEQLANAMAIFSGIAITAALSGVVLYFMADKLVDWMHGAESKHHNEAEALEDEIAVT
GEHEAIKR

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=391, Percent_Identity=28.9002557544757, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI226371746, Length=339, Percent_Identity=24.4837758112094, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI226371748, Length=336, Percent_Identity=23.2142857142857, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI21717816, Length=460, Percent_Identity=24.1304347826087, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787922, Length=484, Percent_Identity=32.0247933884297, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI1789911, Length=507, Percent_Identity=28.5996055226824, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1790572, Length=466, Percent_Identity=30.2575107296137, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1786927, Length=511, Percent_Identity=27.7886497064579, Blast_Score=176, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17569141, Length=373, Percent_Identity=26.2734584450402, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71987453, Length=171, Percent_Identity=29.2397660818713, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17541704, Length=345, Percent_Identity=26.3768115942029, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322946, Length=516, Percent_Identity=22.6744186046512, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571098, Length=376, Percent_Identity=27.1276595744681, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28571102, Length=376, Percent_Identity=27.6595744680851, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571100, Length=376, Percent_Identity=27.6595744680851, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24639583, Length=352, Percent_Identity=28.125, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24639585, Length=343, Percent_Identity=27.9883381924198, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24639581, Length=343, Percent_Identity=27.9883381924198, Blast_Score=99, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 53031; Mature: 52900

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQAD
CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
AISLYGTFTGLVYLTPLIGGWLADTFLGQRRAIMIGGTLMAAGQFILGTPHAWVPGMETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCEECCCCCCCCCCCCE
VFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINVGAFLSGIIVGSV
EEEEEHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
VAAYDGNFQAGFICAGIGMILSLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHH
LTKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
MFIVIFAPVVASIWVRLGKNEPNSPVKFALGLVLLAVGFLFMIGAVVEMGGDASAKSSMW
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
WLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSWFLFVAAANKIGGVVGSFIGH
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGEKEEQLANAMAIFSGIAITAALSGVVLYFMADKLVDWMHGAESKHHNEAEALEDEIAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEE
TGEHEAIKR
CCCHHHHCC
>Mature Secondary Structure 
SVAKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQAD
CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
AISLYGTFTGLVYLTPLIGGWLADTFLGQRRAIMIGGTLMAAGQFILGTPHAWVPGMETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCEECCCCCCCCCCCCE
VFYVGLGTLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINVGAFLSGIIVGSV
EEEEEHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
VAAYDGNFQAGFICAGIGMILSLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHH
LTKVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
MFIVIFAPVVASIWVRLGKNEPNSPVKFALGLVLLAVGFLFMIGAVVEMGGDASAKSSMW
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
WLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSWFLFVAAANKIGGVVGSFIGH
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGEKEEQLANAMAIFSGIAITAALSGVVLYFMADKLVDWMHGAESKHHNEAEALEDEIAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEE
TGEHEAIKR
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]