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The map label for this gene is yggB [C]

Identifier: 117919014

GI number: 117919014

Start: 654980

End: 656635

Strand: Reverse

Name: yggB [C]

Synonym: Shewana3_0561

Alternate gene names: 117919014

Gene position: 656635-654980 (Counterclockwise)

Preceding gene: 117919016

Following gene: 117919012

Centisome position: 13.21

GC content: 47.52

Gene sequence:

>1656_bases
ATGCGCCGCTCACTCATATTCATGTTCGCTCTCAGCTTTCCCCTGCTATTGAGTACCGAGGTTTTCGCGACGGATGCAGC
CGAACCCGTTGCCGCCACTCAAACCGCTACCGTCCCTAACGAAGCCCAAAACGAATTAATTACGCTAAAGTCAGCGATTA
AAGAGGATATTGCGCGCTTATCCCAATCCCAAGGTGAGTTGCGCACCATTGTTGAATATCGCATTCAAAACAAGACATTG
CAGTTACGCAATAAGATTAAAGTGCTGTTAGAAGATGAGAACTACGATAAAGCCTTTATGTTGGCATTGGTGCAAGAGCA
GCTGACATTTAATCTTAAAATCAACGACTACTTCAATGATATTGTGACCAAGTTGTCCCATAAACTCGGCTCGGCGGATG
ATGAGTCGACCTTACTCGAAATCTCTAAACGTGAGCTCGATAAGGACAACAACTACAAACAACGACTCGAGACCTTAAAC
TGGCTCGGCCAAATGGGCGAAGATGTCGCAGCGCAGAAAGCGGAGCTGACCCAAATTCTCTTAAGTCGCGCCGATAACTT
CGATAGCTTTGTCACTTTTACCCAGCAGCAGTTACAAAATGCAGTTAACGCCGCCACTAATGCCGGTAAAGATGTGACCG
CCGCGCAAACCAGTCGCGTCATGCAGCTAAAGGACAGATTGGCGCTCAATAGCCAGAGCCTTAGCATAGATATCGACTTA
CTCGATGCGCTCGAGCAAAACACCGCCTCACTGAAAAAGACCCTGTTCAGTATCTCAGGCGATATCACCCAGGATGTCTT
GAGTATCGATGTGGCCTCAAGCTTAGTCGAACAATGGCTGCATACGGCCAAAGAACAGTCCATCAACCATGGCCCGACTT
TAGTCTTTAAGCTATTTATCTTCTGTATGATCCTGTTTGTCGCAAGCCTTGCGGGCAAACTGGCGAAGAAGATTGTGAGT
AATACCGTTAGTAACTCTAAGTTAAATTTTAGTAAGTTACTGCAAGACTTCTTTACCTCGCTCTCGGGAAAAGCGGTCTT
CACTATCGGTGTACTGATAGCCCTGTCCCAGCTTGGCATAGAGTTAGGCCCGTTATTGGCAGGCTTTGGTATCGCCGGTG
TGATCATAGGTTTCGCCCTGCAGGATTCACTCTCGAACTTTGCCTCGGGCATGATGATTTTGATCTATCGTCCCTACGAT
GTGGGTGACTTGATTAGCGCGGCTGGTGTAACTGGTCGAGTTAGCCATATGAGCCTAGTCTCCACCACAATTAAAACCTT
AGATAACCAAAGGCTTATTATTCCAAACAACAAGATTTGGGGTGATACCATTAACAATATTACCGCCGAGCACCAACGCC
GCGTCGACATGACCTTCGGCATTGGCTATGGCGACAATATTGAGCACGCCGAAGCCGTGCTTAAGTCGATTGTGGAAGCG
CATCCTAAGGTGCAAAAAATCCCTGCACCGCTCATTAAGCTGCACGTTTTAGGGGAGTCCTCGGTCGACTTTATCGTCCG
TCCTTGGGCTAAACCCGAAGATTATTGGGATGTGTATTGGGATATTACCCGCGAAGTGAAAATGCGCTTCGATGCCGAGG
GCATCAGCATTCCTTTCCCGCAGCGCGATGTACATATTTACCAAACCAGTAAATAA

Upstream 100 bases:

>100_bases
CAAATTTTATACTCAGATAGCATTTTATGCGGTTCTAATTTTACAGTATTTAGCGCAGCTCCTATTATGTACCTACCTAT
TTTTATTGAAGATAACGCCT

Downstream 100 bases:

>100_bases
CGCTTCGCCAAGGCGAGAAGTAAACAAAAGGCGCAATCCTAGATTGCGCCTTTTTCATGATATTCGAACTGCTAATCGAT
TAACCTAAACCGGTAATCTC

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MRRSLIFMFALSFPLLLSTEVFATDAAEPVAATQTATVPNEAQNELITLKSAIKEDIARLSQSQGELRTIVEYRIQNKTL
QLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFNDIVTKLSHKLGSADDESTLLEISKRELDKDNNYKQRLETLN
WLGQMGEDVAAQKAELTQILLSRADNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDL
LDALEQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFIFCMILFVASLAGKLAKKIVS
NTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGIELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYD
VGDLISAAGVTGRVSHMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEA
HPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFPQRDVHIYQTSK

Sequences:

>Translated_551_residues
MRRSLIFMFALSFPLLLSTEVFATDAAEPVAATQTATVPNEAQNELITLKSAIKEDIARLSQSQGELRTIVEYRIQNKTL
QLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFNDIVTKLSHKLGSADDESTLLEISKRELDKDNNYKQRLETLN
WLGQMGEDVAAQKAELTQILLSRADNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDL
LDALEQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFIFCMILFVASLAGKLAKKIVS
NTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGIELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYD
VGDLISAAGVTGRVSHMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEA
HPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFPQRDVHIYQTSK
>Mature_551_residues
MRRSLIFMFALSFPLLLSTEVFATDAAEPVAATQTATVPNEAQNELITLKSAIKEDIARLSQSQGELRTIVEYRIQNKTL
QLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFNDIVTKLSHKLGSADDESTLLEISKRELDKDNNYKQRLETLN
WLGQMGEDVAAQKAELTQILLSRADNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDL
LDALEQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFIFCMILFVASLAGKLAKKIVS
NTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGIELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYD
VGDLISAAGVTGRVSHMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEA
HPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFPQRDVHIYQTSK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=246, Percent_Identity=33.739837398374, Blast_Score=168, Evalue=7e-43,
Organism=Escherichia coli, GI1786670, Length=224, Percent_Identity=26.3392857142857, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787591, Length=207, Percent_Identity=28.0193236714976, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI2367355, Length=205, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 61305; Mature: 61305

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSLIFMFALSFPLLLSTEVFATDAAEPVAATQTATVPNEAQNELITLKSAIKEDIARL
CCCHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SQSQGELRTIVEYRIQNKTLQLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFND
HHCCCHHHHHHHHHHCCHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHEEEEEEHHHHHH
IVTKLSHKLGSADDESTLLEISKRELDKDNNYKQRLETLNWLGQMGEDVAAQKAELTQIL
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LSRADNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHH
LDALEQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FCMILFVASLAGKLAKKIVSNTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
ELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYDVGDLISAAGVTGRVSHMSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHH
STTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEA
HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHC
HPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFP
CCCHHHCCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCC
QRDVHIYQTSK
CCCEEEEECCC
>Mature Secondary Structure
MRRSLIFMFALSFPLLLSTEVFATDAAEPVAATQTATVPNEAQNELITLKSAIKEDIARL
CCCHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SQSQGELRTIVEYRIQNKTLQLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFND
HHCCCHHHHHHHHHHCCHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHEEEEEEHHHHHH
IVTKLSHKLGSADDESTLLEISKRELDKDNNYKQRLETLNWLGQMGEDVAAQKAELTQIL
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LSRADNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHH
LDALEQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FCMILFVASLAGKLAKKIVSNTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
ELGPLLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYDVGDLISAAGVTGRVSHMSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHH
STTIKTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEA
HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHC
HPKVQKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFP
CCCHHHCCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCC
QRDVHIYQTSK
CCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]