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The map label for this gene is yhjC [C]

Identifier: 117918975

GI number: 117918975

Start: 611838

End: 612791

Strand: Reverse

Name: yhjC [C]

Synonym: Shewana3_0521

Alternate gene names: 117918975

Gene position: 612791-611838 (Counterclockwise)

Preceding gene: 117918982

Following gene: 117918974

Centisome position: 12.32

GC content: 49.27

Gene sequence:

>954_bases
ATGGATCTCAATCGTGTGCAGATATTTGCCCAAGTGGTCGAGCAAGGCAGCTTCACTGGCGCCGCTAAGGCCCTTGGTTT
AACTAAGGCCACTGTCAGCCGCAAGATTGCCGAACTGGAGTCAGATACTGGTACCCAGTTGTTATTCCGAACGACCCGCG
CCCTCAAACTCACCGAGGCAGGATCGAGTTACTACAATCGGATCAATAAGATCTTGAGCGATCTGCAGAGCGCCGAAAAT
CAACTCAGCGCCCATCAGCAATTGATTAAAGGCAACCTAAAAATAGTGTGCCCCATCGAATTAGGCCAATTGTTCCTCGG
GCCTATCTTCGCCCAGTTTTTAACCCTTTATCCCGATATCACCATTGAGGCTGAGCTCACTAACCGTAAGGTGGATGTGA
TAGAAGAAGGTATCGATTTGTTATTCCAAATCGCCGACTCGAGCGATACTCGTTTGCAGAGTTATTCCTTAGTTAACGCC
TACAAATCCTTGATGGCCAGCCCAAGTTATTTAGCCGAACACGGCACGCCAAAAGTGCCGCAGGACTTAGCCAAGCATAA
AGCGATTCGCTTACAGTCGGCCCATATTGAAGGTGCGTGGAAGCTGTTTGATGGCCAGTCTTGGGTGGTGATTGAACCCG
TCACCCAACTGACGGTAAACAATGTCACTATTGCCCGCGAAGCCGCCATTGCGGGGCTTGGCATTACGGCCGTGCCGTCG
ATTATTGCGCAAGAGGCGATAGAGAAAGGTTATTTAGTGCCACTCCTCGACGATTATCCTATGGTACAAACTAAAGTGGT
GCTCAGCTATCCCAAACGAGCGTATTTGCCCCGCAAATACCGTGTCTTTATCGAGTTTATTTATACCGCCCTGTTCAAAC
GCTGGGGATCACAGGTACTAGAAGTGCCGGAATTTATTGGCCAGCAAGAACCCAATAACTCTCGTTCGACTTAA

Upstream 100 bases:

>100_bases
CATGAATGACTCCTTGATTAGTGAGTGCTAGTGTACTACTGTCTCATCACGTTTATTAGATATCTAAAAATCAACCCACT
GTTTCACAGGTGTAACAATC

Downstream 100 bases:

>100_bases
CAATTGTAACCTTGCTGAGCTGAAATTAGCCGATAAAGGATAAATCCAGAATGTCAGAATTGCCTTAATCCTTAAGCCCC
TATAAGCTTGGCAAGGTAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEAGSSYYNRINKILSDLQSAEN
QLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSSDTRLQSYSLVNA
YKSLMASPSYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGITAVPS
IIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRWGSQVLEVPEFIGQQEPNNSRST

Sequences:

>Translated_317_residues
MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEAGSSYYNRINKILSDLQSAEN
QLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSSDTRLQSYSLVNA
YKSLMASPSYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGITAVPS
IIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRWGSQVLEVPEFIGQQEPNNSRST
>Mature_317_residues
MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEAGSSYYNRINKILSDLQSAEN
QLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDITIEAELTNRKVDVIEEGIDLLFQIADSSDTRLQSYSLVNA
YKSLMASPSYLAEHGTPKVPQDLAKHKAIRLQSAHIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGITAVPS
IIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRWGSQVLEVPEFIGQQEPNNSRST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=34.1137123745819, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=30.6338028169014, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=30.0699300699301, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=27.7397260273973, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789639, Length=284, Percent_Identity=31.3380281690141, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=26.2798634812287, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=27.1428571428571, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=29.9610894941634, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI157672245, Length=197, Percent_Identity=26.9035532994924, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=265, Percent_Identity=24.9056603773585, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790011, Length=282, Percent_Identity=25.177304964539, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787601, Length=120, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=27.4074074074074, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=23.8562091503268, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35275; Mature: 35275

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHC
GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
TIEAELTNRKVDVIEEGIDLLFQIADSSDTRLQSYSLVNAYKSLMASPSYLAEHGTPKVP
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCH
QDLAKHKAIRLQSAHIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGITAVPS
HHHHHHHHHHEECCCCCCEEEEECCCCEEEECCHHHHEECCEEEHHHHHHHCCCHHHHHH
IIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRWGSQVL
HHHHHHHHCCCEEEECCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EVPEFIGQQEPNNSRST
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHC
GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
TIEAELTNRKVDVIEEGIDLLFQIADSSDTRLQSYSLVNAYKSLMASPSYLAEHGTPKVP
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCH
QDLAKHKAIRLQSAHIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGITAVPS
HHHHHHHHHHEECCCCCCEEEEECCCCEEEECCHHHHEECCEEEHHHHHHHCCCHHHHHH
IIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRWGSQVL
HHHHHHHHCCCEEEECCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EVPEFIGQQEPNNSRST
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]