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The map label for this gene is hlyB [H]

Identifier: 117918729

GI number: 117918729

Start: 305555

End: 307471

Strand: Reverse

Name: hlyB [H]

Synonym: Shewana3_0272

Alternate gene names: 117918729

Gene position: 307471-305555 (Counterclockwise)

Preceding gene: 117918730

Following gene: 117918722

Centisome position: 6.18

GC content: 52.48

Gene sequence:

>1917_bases
ATGATATTGAATAACCTTACTATTAAGCAGAAAATCCTGCTGACAGTGACATTTGCTGTGCTGCTGTCGACCATACTCGT
GGGCGTCCTCAGCCAACGCAGTGCAAAAAGCGTGGTACAGCAGCGTATGCTCGGGTCGGAAATGCCCAGCCTAATGATGC
AGATCCGCAACAAGATTGAGCTAGATATTTCGAGCTTAATGAATGCCGCCGAACAACTCGCCAGCAGCCGCATGTTACTG
CAATGGCTTGAAAACGGTCGTCCGCAGGAGCAAGAACCGCAAGTCGTTGCCCAACTGAAGGACATCACCCGCCAATATCA
TTTGGCCCAAGCCTCCTACGCCGATAGACAAACCGCCGCCTACTACACCCAAGATGGTTTTTTACGTGTACTCACCCCTG
CGCAGGATGGTTGGTTTTTTGGTTATCGTGACAGCGGCCAAGAGCGGATGCTTAACGTGTTTACCGAAGCCAATGGCGAA
GTAAAACTCTTTATTAATTATCAGCAACCTAATGGCCGCGGACTCGTTGGCCTCGCCAAATCCCTCGATGATATGGTGCG
TCTACTAGGTTCCTTTAAGATTGAAGAAACTGGCTTTGTCTACTTAGTCGATGCTAAAGGTGAGGTAAAACTGCATCCCG
ACGCCAGTCAAATTGGCAAGAGCAGCCTCAAGAGCTTGTACTCGGGTGCGAATATCAGCTCATTGCTCAATCGTAGCGAC
TTCAACCTGATCGATACCCAAATACAAGGTGAAAACACTTTCGTAGCCAGCAGCTATATTCCCTCCATGGATTGGTATTT
AGTGGCACAAGTGCCCGAAGCCGAAGTGTTCGCCCTGTTGACGGATGCCGCCTACCAGATCTTAATTTGGACCTTAATCA
TTGCCGCGGGCTTTATCATGCTGGCAATTGTGGTGGCCGGTTCAGTAAGCCGCCCTATCGCACAAGTCGCAGCCATGTTC
CGTGATATCGGCGAAGGAGAAGGCGATTTACGTCAGCGCCTCCCCGTTAAAGGCGAAGATGAAATTGCCCAACTGGCACA
AGGGTTTAATAGCTTTATCAGCAAAATCCAAGACTCAGTGATTGAAGTTGCGCAGACCAGCGAACAGCTTGGCTTCTCGG
CGAAGGATGTGTCGAATCAGGCGCAGCAAACCCTTGAAGACAGCCATGAGCAAAAAGATCGCACTATGATGGTTGTGACC
GCCATCAATGAGATGGGCGCAACGGTGAATGAAATCGCCAGCAATGCCGCCCAAGCAGCTGTTGCGGCCAAGGATGCCGA
TACCGAATCCAATAGCGGCCAAGTGGTGGTGACCCGTGCTCGGGATACCATCAATCAACTCTCCCAAGATGTGGAACAAG
TCGGTGAAGTGATTGAATCCCTTGCGACTCATACCAAGTCTATCGGCGGCATTCTCGATGTGATCCGCGCGATCTCTGAG
CAAACTAACCTGTTAGCGCTGAACGCCGCGATTGAAGCCGCCCGTGCCGGTGAGGCGGGACGAGGCTTTGCCGTGGTAGC
CGATGAAGTCCGTAATCTGGCATCGCGCACCGCCGCATCGACCAACGAAGTCCAAGGAATGATCGACAAGTTGCAATCCG
AGGCCAGCCGAGCAGTGAATGCCATGGCCCAAAGCCGTGCGCGCTCCCACGAAGGGGTGGCCGCCGTCGATGAGGCCAGC
CAATCTCTGGTAGGCATTAGTGACCGTATTGGCCTGATCAGCGATATGAACATTCAAGTCGCAGCGGCGACGGAAGAGCA
ATCGACCGTAGTGGAAGACATCAACCGTAACGTGACCGAAATTAACGAGATCACCCAGCGCACCGCCAGTACGGCACAGG
CTGCGGCACAGGCGAGCTTAGCGCTAAACCAACTCGCCCACCGCTTAGACACCTTAGTGGCGAAATTTAAGGTGTAA

Upstream 100 bases:

>100_bases
AAACAAAGGTTAACTTTTAACATTTCTGTCCGATACTTGTTATTGGCTAGAAAACGTCGACCGATATTTCTAAACGTCTA
ACACAGGCATATTGATATTT

Downstream 100 bases:

>100_bases
GCCCAAGATAGGTTAAAACCAAACAAAAACGCCTTAGCGAGTTCTCCCTAAGGCGTTTTTATTGAATCACTTTAAAAGCA
ATTAGTTATCGGAAAGGAAC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 638; Mature: 638

Protein sequence:

>638_residues
MILNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELDISSLMNAAEQLASSRMLL
QWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAYYTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGE
VKLFINYQQPNGRGLVGLAKSLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSD
FNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMF
RDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVT
AINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISE
QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEAS
QSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV

Sequences:

>Translated_638_residues
MILNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELDISSLMNAAEQLASSRMLL
QWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAYYTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGE
VKLFINYQQPNGRGLVGLAKSLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSD
FNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMF
RDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVT
AINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISE
QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEAS
QSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV
>Mature_638_residues
MILNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELDISSLMNAAEQLASSRMLL
QWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAYYTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGE
VKLFINYQQPNGRGLVGLAKSLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSD
FNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMF
RDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVT
AINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISE
QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEAS
QSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=359, Percent_Identity=30.6406685236769, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788195, Length=328, Percent_Identity=31.7073170731707, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787690, Length=351, Percent_Identity=30.4843304843305, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI1789453, Length=349, Percent_Identity=30.3724928366762, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI2367378, Length=364, Percent_Identity=28.8461538461538, Blast_Score=119, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 69191; Mature: 69191

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDISSLMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHE
YYTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGEVKLFINYQQPNGRGLVGLAK
EEECCCCEEEEECCCCCCEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
SLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSD
HHHHHHHHHHCCCEECCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC
FNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIM
CCEEEEEECCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSV
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCHHHHHHHHHHHHH
VAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISE
HHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVN
CCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTE
HHHHHHHHCCCCCHHHHHHHHHHHCHHHCCCCEECCCEEEEECCCHHHHHHHHHCCCHHH
INEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDISSLMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHE
YYTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGEVKLFINYQQPNGRGLVGLAK
EEECCCCEEEEECCCCCCEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
SLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSD
HHHHHHHHHHCCCEECCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC
FNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIM
CCEEEEEECCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSV
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCHHHHHHHHHHHHH
VAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISE
HHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVN
CCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTE
HHHHHHHHCCCCCHHHHHHHHHHHCHHHCCCCEECCCEEEEECCCHHHHHHHHHCCCHHH
INEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]