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The map label for this gene is ctpA [H]

Identifier: 117918508

GI number: 117918508

Start: 57828

End: 59033

Strand: Reverse

Name: ctpA [H]

Synonym: Shewana3_0049

Alternate gene names: 117918508

Gene position: 59033-57828 (Counterclockwise)

Preceding gene: 117918509

Following gene: 117918507

Centisome position: 1.19

GC content: 48.67

Gene sequence:

>1206_bases
ATGAAACAACTAATCCGCAATATCGTCTGCCTTGGGCTCGGCCTAAGCCTAGGTCTGTCCATTAGCCTCTCCAGCCAAGA
GAATGCCAAGTCATATCAAAGTGACTTCGACTACCCGCTATTGCAGGATGTATTAGAAACCGTCGAAACCTATTACGTTA
AAACCGTTTCCAAAGATGAGCTGGTGCAAGCCGCCATTAAAGGGATTTTTGAGCATTTAGATCCCTATTCCAGCTTTTTA
AATCACCAAGAATTACTCGACTTAAAAGACTCAAATCGGGGCGAATACTTTGGCTTTGGCTTTGAGGTCGCCAGCGATAA
AGACCATATCAGCATTATCGCGCCCTTTGCCAATTCCCCCGCCGAACAGGCCGGTATCCAAGCGGGCGATATCATTATCA
AGCTGAATGACACGCCAACCACCGAAACCAACCTTGCGGATATCCTCAATCAAATCAAACAACATAGCCTCAGCAATCAG
AGTATTCACCTCACACTGAAGCACCATAATGATGACGCCCAGTTCGAGGTATCACTCAAACCCAGTACCATCACCATTCA
ATCTGTCACCAGCAAATTACTGGATGGTAATATCGGCTACGTTAGGCTCAGTAGCTTTCAAGAGAACTCCACCGAAGACA
TGGTGCGCAGTTTAAGCCAGTGGCAAAACGCGCATCTTACGGGTTTGATATTAGATTTACGTAATAATCCCGGCGGCTTG
CTGGATCAGGCAATCAAAATCGCTGACCTCTTTTTAGCGAAGGGCCGAATCGTCTCAACCTCTGGCCGCTTTTTCGATGC
CAACTCCGACTATTACGCCTCACCGCAAACCATGCTGACCAATGTGCCTATGTTAGTGCTGATCAACAAAGGCTCGGCCT
CCGCCTCCGAAGTCCTCGCTGCCGCCCTGCAGGAAAATGGCCGCGCCAAACTGCTTGGTGAAACTAGCTTTGGCAAAGGC
ACGGTGCAAAGCCTGATCCCCATACTGAACGACGGCAATGCCATCAAGCTCACCATCGCCCAGTACAACACCCCCAGAGG
GGAAAACATTCACGATATCGGCATAGTGCCCGACATTAAAGTTGCAACCGAAACTGGCTCCAATCAAAAGAATATGGCTA
TAATCGACGCCATCTCAGCACGAACCGATGTTAGCCAAGACAGCCTAGTCACCTCGGCAATCGCTTGGATGCAACATCAT
GACTAA

Upstream 100 bases:

>100_bases
TGAAATAAGGTATAAGGGGCAAGCGGTCGATCCAGCCAAGTACTGCCGTTAATCAGTACTCTCGCTAAGGTGGCCGTCCC
CATCATCACAGGGGACGGCT

Downstream 100 bases:

>100_bases
TAAGAAGAAATAGTGCGTCTATTTTACATATTGGCCCTTTGGGCTCTGAGCATTGCGCCAAGCAATGCGGCCCAAATCGC
CTTGATCATCGATGATATTG

Product: C-terminal processing peptidase-3

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKQLIRNIVCLGLGLSLGLSISLSSQENAKSYQSDFDYPLLQDVLETVETYYVKTVSKDELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVASDKDHISIIAPFANSPAEQAGIQAGDIIIKLNDTPTTETNLADILNQIKQHSLSNQ
SIHLTLKHHNDDAQFEVSLKPSTITIQSVTSKLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNAHLTGLILDLRNNPGGL
LDQAIKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILNDGNAIKLTIAQYNTPRGENIHDIGIVPDIKVATETGSNQKNMAIIDAISARTDVSQDSLVTSAIAWMQHH
D

Sequences:

>Translated_401_residues
MKQLIRNIVCLGLGLSLGLSISLSSQENAKSYQSDFDYPLLQDVLETVETYYVKTVSKDELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVASDKDHISIIAPFANSPAEQAGIQAGDIIIKLNDTPTTETNLADILNQIKQHSLSNQ
SIHLTLKHHNDDAQFEVSLKPSTITIQSVTSKLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNAHLTGLILDLRNNPGGL
LDQAIKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILNDGNAIKLTIAQYNTPRGENIHDIGIVPDIKVATETGSNQKNMAIIDAISARTDVSQDSLVTSAIAWMQHH
D
>Mature_401_residues
MKQLIRNIVCLGLGLSLGLSISLSSQENAKSYQSDFDYPLLQDVLETVETYYVKTVSKDELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVASDKDHISIIAPFANSPAEQAGIQAGDIIIKLNDTPTTETNLADILNQIKQHSLSNQ
SIHLTLKHHNDDAQFEVSLKPSTITIQSVTSKLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNAHLTGLILDLRNNPGGL
LDQAIKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILNDGNAIKLTIAQYNTPRGENIHDIGIVPDIKVATETGSNQKNMAIIDAISARTDVSQDSLVTSAIAWMQHH
D

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=394, Percent_Identity=24.8730964467005, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 43788; Mature: 43788

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLIRNIVCLGLGLSLGLSISLSSQENAKSYQSDFDYPLLQDVLETVETYYVKTVSKDE
CHHHHHHHHHHHCCHHHCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHEECCHHH
LVQAAIKGIFEHLDPYSSFLNHQELLDLKDSNRGEYFGFGFEVASDKDHISIIAPFANSP
HHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCC
AEQAGIQAGDIIIKLNDTPTTETNLADILNQIKQHSLSNQSIHLTLKHHNDDAQFEVSLK
HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEC
PSTITIQSVTSKLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNAHLTGLILDLRNNPGGL
CCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
LDQAIKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLA
HHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHH
AALQENGRAKLLGETSFGKGTVQSLIPILNDGNAIKLTIAQYNTPRGENIHDIGIVPDIK
HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCE
VATETGSNQKNMAIIDAISARTDVSQDSLVTSAIAWMQHHD
EEECCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQLIRNIVCLGLGLSLGLSISLSSQENAKSYQSDFDYPLLQDVLETVETYYVKTVSKDE
CHHHHHHHHHHHCCHHHCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHEECCHHH
LVQAAIKGIFEHLDPYSSFLNHQELLDLKDSNRGEYFGFGFEVASDKDHISIIAPFANSP
HHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCC
AEQAGIQAGDIIIKLNDTPTTETNLADILNQIKQHSLSNQSIHLTLKHHNDDAQFEVSLK
HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEC
PSTITIQSVTSKLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNAHLTGLILDLRNNPGGL
CCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
LDQAIKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLA
HHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHH
AALQENGRAKLLGETSFGKGTVQSLIPILNDGNAIKLTIAQYNTPRGENIHDIGIVPDIK
HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCE
VATETGSNQKNMAIIDAISARTDVSQDSLVTSAIAWMQHHD
EEECCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]