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The map label for this gene is yibP [H]

Identifier: 117918509

GI number: 117918509

Start: 59082

End: 60215

Strand: Reverse

Name: yibP [H]

Synonym: Shewana3_0050

Alternate gene names: 117918509

Gene position: 60215-59082 (Counterclockwise)

Preceding gene: 117918510

Following gene: 117918508

Centisome position: 1.21

GC content: 48.85

Gene sequence:

>1134_bases
GTGAGCACTCGACTCCCCGTTAAAGCCAGCATTATTGCTGGCTTTATGATGTTATCTTTCTCGGTCTACGCTTCTGATTT
GGAGAAGCGTCAGTCCGAGTTGAAATCCATCCAAGCGCAAATCAACCAACAACAAAGCGCACTCAAAAACACCAGTAAAC
AGCGGGAAAAGTTACTCGCCTTGCTGCGTAGTGACGAAGAGGCCATTGCGGCGGCAGCTAAAAAGGTCAATAGCACCAAA
AACAGTTTGGCGCAGATTGATACTAAGCTCGCTGAACTCAAACAACGCCAAGAAGAGTTAGAAACCCTCAAGGTCAGCCA
GCAAAAAACGCTCTCAAAACAACTCTCGAGCGCCTATCTTGCCGGTAACCACGATTACACTAAGATGATGCTGAATCAGC
AGAGTCCCGCCACGATTGAACGGATGTTGGCATATTACCAATACCTCAACAAGGCACGCATGAACTCGATTAACGAGTTA
AAAAAGACCATCACCGAACTAGATGAAATTAAAGTCTCGCAAACCAGCAAGCAAAAACAATTAACTAAGCTGATGGCCGA
GCAACAAGTGCAATCTAAGCGCTTGAACCAAGAACAAGATCAACGCCAGCTCACCCTAAAAGAATTACAGCGCACCCTGA
ATACCAAGGGCGCCGAACTCGAACAACTGCAAATTGAAGAAGCCAGCTTAAAACGAGTGGTTGAGCAAGCGCTTAAGGCG
ATGCGTGATAACCCCTCGATGGAAGGCTTCGATAAACAAGGCGGCAAACTCAAGTGGCCGACCAAAGGCCGCGTCAGTGC
CAGCTTTGGCAGCCCAAGATCCGGCCAAGTGGTGTGGAAAGGCACTATGCTCTCCGCACCCGAAGGGCAAAATATTCGCG
CGGTTTCTGGCGGCAAAGTCATCTATGCCGACTGGCTTAAAGGCTTTGGTATGGTGATGGTGATAGACCATGGTAAAGGT
TACATGAGCCTCTACGGCCATGCGCAAGCCCTGTTAAAAAGCCCTGGGGATATGGTCAAAACCGGTGAAGCTATTGCTTT
AGTCGGACGTTCGGGTGGACAGACAGAGCCTGGCCTATACTTTGAAATAAGGTATAAGGGGCAAGCGGTCGATCCAGCCA
AGTACTGCCGTTAA

Upstream 100 bases:

>100_bases
AGCGATGTCGCCCCAACGATTCTGCACCTGATGGGTGAAACCATTCCCGCAGAGATGACGGGTAAGCCCTTAATCCACGT
AAAAGAGTAGTTGTTACCTA

Downstream 100 bases:

>100_bases
TCAGTACTCTCGCTAAGGTGGCCGTCCCCATCATCACAGGGGACGGCTATGAAACAACTAATCCGCAATATCGTCTGCCT
TGGGCTCGGCCTAAGCCTAG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSTRLPVKASIIAGFMMLSFSVYASDLEKRQSELKSIQAQINQQQSALKNTSKQREKLLALLRSDEEAIAAAAKKVNSTK
NSLAQIDTKLAELKQRQEELETLKVSQQKTLSKQLSSAYLAGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMNSINEL
KKTITELDEIKVSQTSKQKQLTKLMAEQQVQSKRLNQEQDQRQLTLKELQRTLNTKGAELEQLQIEEASLKRVVEQALKA
MRDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSAPEGQNIRAVSGGKVIYADWLKGFGMVMVIDHGKG
YMSLYGHAQALLKSPGDMVKTGEAIALVGRSGGQTEPGLYFEIRYKGQAVDPAKYCR

Sequences:

>Translated_377_residues
MSTRLPVKASIIAGFMMLSFSVYASDLEKRQSELKSIQAQINQQQSALKNTSKQREKLLALLRSDEEAIAAAAKKVNSTK
NSLAQIDTKLAELKQRQEELETLKVSQQKTLSKQLSSAYLAGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMNSINEL
KKTITELDEIKVSQTSKQKQLTKLMAEQQVQSKRLNQEQDQRQLTLKELQRTLNTKGAELEQLQIEEASLKRVVEQALKA
MRDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSAPEGQNIRAVSGGKVIYADWLKGFGMVMVIDHGKG
YMSLYGHAQALLKSPGDMVKTGEAIALVGRSGGQTEPGLYFEIRYKGQAVDPAKYCR
>Mature_376_residues
STRLPVKASIIAGFMMLSFSVYASDLEKRQSELKSIQAQINQQQSALKNTSKQREKLLALLRSDEEAIAAAAKKVNSTKN
SLAQIDTKLAELKQRQEELETLKVSQQKTLSKQLSSAYLAGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMNSINELK
KTITELDEIKVSQTSKQKQLTKLMAEQQVQSKRLNQEQDQRQLTLKELQRTLNTKGAELEQLQIEEASLKRVVEQALKAM
RDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSAPEGQNIRAVSGGKVIYADWLKGFGMVMVIDHGKGY
MSLYGHAQALLKSPGDMVKTGEAIALVGRSGGQTEPGLYFEIRYKGQAVDPAKYCR

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0756 [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=411, Percent_Identity=33.3333333333333, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=39.4957983193277, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082174, Length=118, Percent_Identity=36.4406779661017, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081989, Length=135, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 42133; Mature: 42002

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRLPVKASIIAGFMMLSFSVYASDLEKRQSELKSIQAQINQQQSALKNTSKQREKLLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSDEEAIAAAAKKVNSTKNSLAQIDTKLAELKQRQEELETLKVSQQKTLSKQLSSAYL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMNSINELKKTITELDEIKVSQTSKQKQ
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTKLMAEQQVQSKRLNQEQDQRQLTLKELQRTLNTKGAELEQLQIEEASLKRVVEQALKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MRDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSAPEGQNIRAVSGGKV
HHCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCE
IYADWLKGFGMVMVIDHGKGYMSLYGHAQALLKSPGDMVKTGEAIALVGRSGGQTEPGLY
EEHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCCEE
FEIRYKGQAVDPAKYCR
EEEEECCCCCCHHHHCC
>Mature Secondary Structure 
STRLPVKASIIAGFMMLSFSVYASDLEKRQSELKSIQAQINQQQSALKNTSKQREKLLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSDEEAIAAAAKKVNSTKNSLAQIDTKLAELKQRQEELETLKVSQQKTLSKQLSSAYL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMNSINELKKTITELDEIKVSQTSKQKQ
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTKLMAEQQVQSKRLNQEQDQRQLTLKELQRTLNTKGAELEQLQIEEASLKRVVEQALKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MRDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSAPEGQNIRAVSGGKV
HHCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCE
IYADWLKGFGMVMVIDHGKGYMSLYGHAQALLKSPGDMVKTGEAIALVGRSGGQTEPGLY
EEHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCCEE
FEIRYKGQAVDPAKYCR
EEEEECCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]