Click here to switch to the map view.

The map label for this gene is yibQ [H]

Identifier: 117918507

GI number: 117918507

Start: 57060

End: 57815

Strand: Reverse

Name: yibQ [H]

Synonym: Shewana3_0048

Alternate gene names: 117918507

Gene position: 57815-57060 (Counterclockwise)

Preceding gene: 117918508

Following gene: 117918504

Centisome position: 1.16

GC content: 49.87

Gene sequence:

>756_bases
GTGCGTCTATTTTACATATTGGCCCTTTGGGCTCTGAGCATTGCGCCAAGCAATGCGGCCCAAATCGCCTTGATCATCGA
TGATATTGGCTATCGCCACACCGACGAAGCCGTGCTGTCACTCCCAAGCGCAGTCACCTTGTCGGTACTGCCACACACGC
CGCTCAGTAATAAATTAGCCAAAGCCGCGCACGCCAAAGGCCACGAGATTATGCTGCACTTACCCATGCAGGCACTCAAT
GGCAAAGCCTTAGGTGTTGGTGGTTTAACTAATAATATGAGCGAAGCACAGATACGTAGCAGTGTACTTGCTGCCATCGC
CAGTGTGCCCTTTGCTAAAGGCGCCAACAATCATATGGGAAGCCTACTAACGCAGCTCGATGATCCTATGCTGTGGGTGA
TGGACACGTTAAAGCAGAAACAGCTCTACTTTGTCGATAGTATGACAACCAAGTTCACTAAGGCGGGAGATAAGGCAGAT
TCGCTCGGCGTGCCACTGCTACGACGCAAACTCTTTCTCGATAATGACGTCAGTGCCGCAGCATTGGAAAAACAGTTTAA
TTTGATGATAAGTCAGGCTCACTCGCAAGGCAGTCTGGTAGCTATCGCCCATCCTTACCCCGAAACCATTCACTTCTTAA
AAACGAACTTAGCGCGCCTAAAGGCGGAAGGGATTGAGCTAGTGCCGACGTCAAGCTTGTTGCCCATCGAACTAGCCCAT
GAGAAAGGCACTAATCCAACTGTAAGACAGAAATAG

Upstream 100 bases:

>100_bases
TATAATCGACGCCATCTCAGCACGAACCGATGTTAGCCAAGACAGCCTAGTCACCTCGGCAATCGCTTGGATGCAACATC
ATGACTAATAAGAAGAAATA

Downstream 100 bases:

>100_bases
TCATGTCTGGCAGCAGTGCCAACAGCTCATTTCGATTACTGACAATGTCCTGCAGGCTGTATTGATCTAGTACGTTTAAA
TACGCCTCAACGGCTTGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRLFYILALWALSIAPSNAAQIALIIDDIGYRHTDEAVLSLPSAVTLSVLPHTPLSNKLAKAAHAKGHEIMLHLPMQALN
GKALGVGGLTNNMSEAQIRSSVLAAIASVPFAKGANNHMGSLLTQLDDPMLWVMDTLKQKQLYFVDSMTTKFTKAGDKAD
SLGVPLLRRKLFLDNDVSAAALEKQFNLMISQAHSQGSLVAIAHPYPETIHFLKTNLARLKAEGIELVPTSSLLPIELAH
EKGTNPTVRQK

Sequences:

>Translated_251_residues
MRLFYILALWALSIAPSNAAQIALIIDDIGYRHTDEAVLSLPSAVTLSVLPHTPLSNKLAKAAHAKGHEIMLHLPMQALN
GKALGVGGLTNNMSEAQIRSSVLAAIASVPFAKGANNHMGSLLTQLDDPMLWVMDTLKQKQLYFVDSMTTKFTKAGDKAD
SLGVPLLRRKLFLDNDVSAAALEKQFNLMISQAHSQGSLVAIAHPYPETIHFLKTNLARLKAEGIELVPTSSLLPIELAH
EKGTNPTVRQK
>Mature_251_residues
MRLFYILALWALSIAPSNAAQIALIIDDIGYRHTDEAVLSLPSAVTLSVLPHTPLSNKLAKAAHAKGHEIMLHLPMQALN
GKALGVGGLTNNMSEAQIRSSVLAAIASVPFAKGANNHMGSLLTQLDDPMLWVMDTLKQKQLYFVDSMTTKFTKAGDKAD
SLGVPLLRRKLFLDNDVSAAALEKQFNLMISQAHSQGSLVAIAHPYPETIHFLKTNLARLKAEGIELVPTSSLLPIELAH
EKGTNPTVRQK

Specific function: Unknown

COG id: COG2861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0755 [H]

Homologues:

Organism=Escherichia coli, GI87082298, Length=221, Percent_Identity=40.7239819004525, Blast_Score=164, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006837
- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF04748 Polysacc_deac_2 [H]

EC number: NA

Molecular weight: Translated: 27185; Mature: 27185

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFYILALWALSIAPSNAAQIALIIDDIGYRHTDEAVLSLPSAVTLSVLPHTPLSNKLA
CHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCHHHHH
KAAHAKGHEIMLHLPMQALNGKALGVGGLTNNMSEAQIRSSVLAAIASVPFAKGANNHMG
HHHHCCCCEEEEEECHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SLLTQLDDPMLWVMDTLKQKQLYFVDSMTTKFTKAGDKADSLGVPLLRRKLFLDNDVSAA
HHHHHHCCCHHHHHHHHHHHHEEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
ALEKQFNLMISQAHSQGSLVAIAHPYPETIHFLKTNLARLKAEGIELVPTSSLLPIELAH
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEC
EKGTNPTVRQK
CCCCCCCCCCC
>Mature Secondary Structure
MRLFYILALWALSIAPSNAAQIALIIDDIGYRHTDEAVLSLPSAVTLSVLPHTPLSNKLA
CHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCEEEEEECCCCCHHHHH
KAAHAKGHEIMLHLPMQALNGKALGVGGLTNNMSEAQIRSSVLAAIASVPFAKGANNHMG
HHHHCCCCEEEEEECHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SLLTQLDDPMLWVMDTLKQKQLYFVDSMTTKFTKAGDKADSLGVPLLRRKLFLDNDVSAA
HHHHHHCCCHHHHHHHHHHHHEEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
ALEKQFNLMISQAHSQGSLVAIAHPYPETIHFLKTNLARLKAEGIELVPTSSLLPIELAH
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEC
EKGTNPTVRQK
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]