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The map label for this gene is recF [H]

Identifier: 117918470

GI number: 117918470

Start: 12317

End: 13399

Strand: Direct

Name: recF [H]

Synonym: Shewana3_0011

Alternate gene names: 117918470

Gene position: 12317-13399 (Clockwise)

Preceding gene: 117918469

Following gene: 117918471

Centisome position: 0.25

GC content: 45.24

Gene sequence:

>1083_bases
ATGAGTCTTATCCGTCTTAATATTGATTCTTTTCGCAATATTCAATTGGCGCAGCTGAGCCCAAGTTCTGGGATCAATCT
GATTTATGGCCAAAACGGCAGCGGCAAAACCAGTATACTTGAGGCTATTTACTTTCTCGGGATGGGGCGTTCGTTTCGCA
GTCATTTATCCCAACGGGTGATCAATAACGAACAGGATAAGTTAACCCTGTTTGCGACCTTAAATTTACCCCGTGGTGAC
AGTAAAATCGGCTTGCGACGTTTCCGTAGTGGCGAAACCGAAGTCAAAATCGACGGAGAAAAGGTGAAACGGCTATCGAC
ATTAGCCGAAACTTTACCTATCCAAGTGATCACGCCGGAAAGCTTTTCGCTCCTGTTTGAAGGTCCTAAATCCCGTCGGC
AGTTTATCGATTGGGGTGCCTTTCATTCTGACCCGCAGTTTTATGCGGCATGGGTGAACGTAAGACGGGTTCTAAAGCAA
CGAAATCAACTGCTTAGAAATAATTCTTCCTATGATCAAATCCAATATTGGGATAGGGAGTTTGTCCGTTATACCGAGCA
GGTCACAGAAATACGAAACCGTTATGTAGACTCGTTAAATGAGCTACTTAAGGGTATAATCGGGGAGTTTTTACCGCAGG
TAGATGTTAAGGTTTCATTTACTCGCGGCTGGGATAGCAAAACGGATTTTGCACAACTTCTCGAATCCCAATATCCCAGA
GATTTGGCTACGGGTCATACCGTCAGCGGTCCCCATAAAGCTGACCTCAGACTTCGTGTAGGTAGTTTACCGGCGCAGGA
TGCCATGTCCCGTGGTCAATTGAAATTATTAGTCTGTGCACTGCGTATTGCACAGGGAAAGTTGCTCAAACAACAAATAG
ATAAACACAGTATTTATCTTGTGGATGATCTTCCATCCGAGTTGGATGCACAGCATAGGCAGCTATTGCTTAAGCAGCTA
GTGGACACTGGTGCACAAGTGTTTGTCACTGCCATTGAGCCTGCAGCAATAGTCGATTCGTTACACATGCCTCCCAGTAG
GATGTTCCATGTGGAACAGGGACGTGTAACGGTAATTGAATAA

Upstream 100 bases:

>100_bases
TATCCTTTGTTGCCTTATTTACTCGGATGGATGTGAATTGCGGTATGATGACTGTTCTGAGTCTTGGCCTAAGCCGTCGA
TGCGGTTTGATGAGTAACGC

Downstream 100 bases:

>100_bases
CCATTGAGAGAATAATATGTCAGAGAATAGTTACGATTCTTCGAGTATTAAGGTCCTTAAGGGCCTTGATGCAGTACGTA
AGAGACCTGGGATGTATATT

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNEQDKLTLFATLNLPRGD
SKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQ
RNQLLRNNSSYDQIQYWDREFVRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR
DLATGHTVSGPHKADLRLRVGSLPAQDAMSRGQLKLLVCALRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQL
VDTGAQVFVTAIEPAAIVDSLHMPPSRMFHVEQGRVTVIE

Sequences:

>Translated_360_residues
MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNEQDKLTLFATLNLPRGD
SKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQ
RNQLLRNNSSYDQIQYWDREFVRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR
DLATGHTVSGPHKADLRLRVGSLPAQDAMSRGQLKLLVCALRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQL
VDTGAQVFVTAIEPAAIVDSLHMPPSRMFHVEQGRVTVIE
>Mature_359_residues
SLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNEQDKLTLFATLNLPRGDS
KIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQR
NQLLRNNSSYDQIQYWDREFVRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPRD
LATGHTVSGPHKADLRLRVGSLPAQDAMSRGQLKLLVCALRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLV
DTGAQVFVTAIEPAAIVDSLHMPPSRMFHVEQGRVTVIE

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=357, Percent_Identity=45.6582633053221, Blast_Score=338, Evalue=4e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 40977; Mature: 40845

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV
CCEEEEECCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
INNEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPE
HCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEECCC
SFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE
CCEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FVRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
DLATGHTVSGPHKADLRLRVGSLPAQDAMSRGQLKLLVCALRIAQGKLLKQQIDKHSIYL
HHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
VDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHMPPSRMFHVEQGRVTVIE
EECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCHHHEEEEECCCEEEEC
>Mature Secondary Structure 
SLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV
CEEEEECCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
INNEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPE
HCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEECCC
SFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE
CCEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FVRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
DLATGHTVSGPHKADLRLRVGSLPAQDAMSRGQLKLLVCALRIAQGKLLKQQIDKHSIYL
HHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
VDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHMPPSRMFHVEQGRVTVIE
EECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCHHHEEEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA