Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 116872002

GI number: 116872002

Start: 621397

End: 621846

Strand: Direct

Name: ydgJ [H]

Synonym: lwe0582

Alternate gene names: 116872002

Gene position: 621397-621846 (Clockwise)

Preceding gene: 116871999

Following gene: 116872003

Centisome position: 22.08

GC content: 35.56

Gene sequence:

>450_bases
ATGGAGGTGAAAACGCTGAAACCATGTACAGAACGGTCAGAATTACTTTACCGGATGCATTTGTTATCGAAGGAAATTAG
TCATGTTTTTGAACAACAAACCAATATGAGTTTTACGAAAGTAGAGATTTTATTTCATATTAAGCAAACACCTGGTCAAA
GCCAAAATCGGTTAAAAGAGAAACTTTATATTGATTCGGCAAGTATTACCCGTCATTTGAAGCGAATGGAAGATCAAGGG
CTTATTATTCGTAAAAAGCAAGACGATAATAAACGCTATACGTACTTATTTTTAACAACAGCTGGCGAGGCGGAATTAGC
TTCTTTACTTCTAGAAAAAGAAACATTCCAGACAGAAGCTTTAGAGGCATTTTCAGAGGATGAAGTTCGTGCGTTACTAA
AATCAGTCACAAAAATGATGAATAATGTAGAGAAAATGGAGGAGAAGTGA

Upstream 100 bases:

>100_bases
ATATTGCTTACAAAAAATTAGCCGCTAATATTTGAGCAGATGTTTTGTGCTTTAGAAAAGAAAGCGTATAATAGTTGATA
TATCATTTGACGTATCAACT

Downstream 100 bases:

>100_bases
AAATGAAAGCAGTTGTAATTGAAAATTATGGTGGAAAAGAAGAATTAAAAGAAAAAGAAGTTGCAATGCCAAAAGCTGGT
AAAAACCAAGTAATTGTAAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MEVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIKQTPGQSQNRLKEKLYIDSASITRHLKRMEDQG
LIIRKKQDDNKRYTYLFLTTAGEAELASLLLEKETFQTEALEAFSEDEVRALLKSVTKMMNNVEKMEEK

Sequences:

>Translated_149_residues
MEVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIKQTPGQSQNRLKEKLYIDSASITRHLKRMEDQG
LIIRKKQDDNKRYTYLFLTTAGEAELASLLLEKETFQTEALEAFSEDEVRALLKSVTKMMNNVEKMEEK
>Mature_149_residues
MEVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIKQTPGQSQNRLKEKLYIDSASITRHLKRMEDQG
LIIRKKQDDNKRYTYLFLTTAGEAELASLLLEKETFQTEALEAFSEDEVRALLKSVTKMMNNVEKMEEK

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17533; Mature: 17533

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIKQTPGQSQNRLKE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHH
KLYIDSASITRHLKRMEDQGLIIRKKQDDNKRYTYLFLTTAGEAELASLLLEKETFQTEA
HHHCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
LEAFSEDEVRALLKSVTKMMNNVEKMEEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIKQTPGQSQNRLKE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHH
KLYIDSASITRHLKRMEDQGLIIRKKQDDNKRYTYLFLTTAGEAELASLLLEKETFQTEA
HHHCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
LEAFSEDEVRALLKSVTKMMNNVEKMEEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]