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The map label for this gene is 116871524

Identifier: 116871524

GI number: 116871524

Start: 107864

End: 108352

Strand: Direct

Name: 116871524

Synonym: lwe0104

Alternate gene names: NA

Gene position: 107864-108352 (Clockwise)

Preceding gene: 116871522

Following gene: 116871525

Centisome position: 3.83

GC content: 33.54

Gene sequence:

>489_bases
TTGTTACTTTCGGATGAACAAATCATACAAGTTACAAAGCAGATGTACGTTTATTTAATAAGACAGGGAGTTAGGGCCGA
AGTAGCAAAAGACCTTGCGCAAGATGCTATTATTAAAGCTTGGCGTTACGAGAAAGAAATCCCTCTTGAAAAACAAAAAG
CCTTTATCTTTAAAATCGTAACGAATGAATTCTATCAGTATTACCGAAAACACAAAAGAGAAATCATTACAGAAGACTTT
AGCCACCTAATCCATTCCGGAGAATTGACGGATAATTTATTAATACAGCAAGAACAAAGCACAGAAATCATAAACACGAT
GAAAAATCTAAATGAAAATCATCAAAAATTATTAATGATGAAATATGATATCGGCATGAGTTATCAGGAAATTGCAGAGT
ATTTGGATACAACTCCATCTAACGTGAAGACCTATTTATCAAGAGCTAGAAGTGCCTTTAAGAAAATCTGGGGGGATTTT
AATGAGTAA

Upstream 100 bases:

>100_bases
TTTTAGTAATATTTTAGACACTTTTTCGCCATAATACAAATTTTAAAATAGTGTATACTTTTTGCGGCTTTGTGCATTGT
ATATTTAAGGAGGGGGATAA

Downstream 100 bases:

>100_bases
GGAACCAAATGATGAATTAGAAGACTTGTTTGATATAGAAAAAATGAGCAAAGAAGTAAAAAAAGTAAAGCGTCGTAGCA
TTTCTAAAACATCAGTAATC

Product: sigma factor 70 domain-containing protein

Products: NA

Alternate protein names: RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MLLSDEQIIQVTKQMYVYLIRQGVRAEVAKDLAQDAIIKAWRYEKEIPLEKQKAFIFKIVTNEFYQYYRKHKREIITEDF
SHLIHSGELTDNLLIQQEQSTEIINTMKNLNENHQKLLMMKYDIGMSYQEIAEYLDTTPSNVKTYLSRARSAFKKIWGDF
NE

Sequences:

>Translated_162_residues
MLLSDEQIIQVTKQMYVYLIRQGVRAEVAKDLAQDAIIKAWRYEKEIPLEKQKAFIFKIVTNEFYQYYRKHKREIITEDF
SHLIHSGELTDNLLIQQEQSTEIINTMKNLNENHQKLLMMKYDIGMSYQEIAEYLDTTPSNVKTYLSRARSAFKKIWGDF
NE
>Mature_162_residues
MLLSDEQIIQVTKQMYVYLIRQGVRAEVAKDLAQDAIIKAWRYEKEIPLEKQKAFIFKIVTNEFYQYYRKHKREIITEDF
SHLIHSGELTDNLLIQQEQSTEIINTMKNLNENHQKLLMMKYDIGMSYQEIAEYLDTTPSNVKTYLSRARSAFKKIWGDF
NE

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19336; Mature: 19336

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSDEQIIQVTKQMYVYLIRQGVRAEVAKDLAQDAIIKAWRYEKEIPLEKQKAFIFKIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TNEFYQYYRKHKREIITEDFSHLIHSGELTDNLLIQQEQSTEIINTMKNLNENHQKLLMM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH
KYDIGMSYQEIAEYLDTTPSNVKTYLSRARSAFKKIWGDFNE
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLLSDEQIIQVTKQMYVYLIRQGVRAEVAKDLAQDAIIKAWRYEKEIPLEKQKAFIFKIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TNEFYQYYRKHKREIITEDFSHLIHSGELTDNLLIQQEQSTEIINTMKNLNENHQKLLMM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH
KYDIGMSYQEIAEYLDTTPSNVKTYLSRARSAFKKIWGDFNE
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA