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The map label for this gene is yjcC [C]

Identifier: 116690989

GI number: 116690989

Start: 3284056

End: 3285897

Strand: Direct

Name: yjcC [C]

Synonym: Bcen2424_2971

Alternate gene names: 116690989

Gene position: 3284056-3285897 (Clockwise)

Preceding gene: 116690988

Following gene: 116690990

Centisome position: 94.26

GC content: 70.36

Gene sequence:

>1842_bases
ATGCCCGCGCTCCCCTCCGATTCCGCTGTCGCCCGCACTACGCGCCTGATCGCGGAACGCGCGCTCGCCGCCGTGTTCCA
GCCGATCGTCGACCTCGGATCGGGGACGGTCATCGGTTACGAAGGGCTGATCCGCGGCCCGCGCGGCACCGACCTCGAGC
CGCCCGCCGCGCTGTTCGCGCAGGCCGCGCGCGACGGCGAAACCATCGCGCTCGAACGGGCCGCCGCGCTCACCTGCCTC
GACGCGTTCGCGGCGCTCGGCTGCGACGGCAAGCTGTTCCTCAATTTCAGCGCGGGCACCATCCTCACGCTCGCCAGCGA
ACGCGAGCGCGCACGTCAATTCCTCGGCCGCGCGCGGATCGGCGCGGAGCGCATCGTGATCGAGCTCACCGAGCAAAACG
CGATTCCCGATCTCGCGGACATCGGGCCGGCGGTCGCATCGTTGCGCGACGCCGGCATCCAGTTCGCGCTCGACGACTAC
GGCACCGCGAACGCCAGCATGAACCTGTGGCTGCGCCTGCATCCGGACGTCGTGAAGATCGATCGCTTCTTCATCCATGA
CATCGCGCGCGATCCGCTGAAGTTCGAAGCCGTGAAGGCGATGCAGCACTTCGCGCACGCGAGCGGCGCGAAGCTGATCG
CGGAAGGCATCGAGAATGAATGCGACCTGATCGTCGTGCGCGACATGGGCATCTGCTGCGTGCAGGGCTTCCTGCTCGGC
CGGCCGAACGCGCAGCCGTCGCGGGTCGTCGCGCCGGCCGCGCGCGACGCGATCCGCGCGCCGCACATCGCGGTGTTTCC
CGGCGTGACGCGCGCGGTACGGCCGGCCGGCACGATCGCCGGAAAGATGCTCGTGCCCGCCCCGGCGCTGCCGCGCGACG
CGACCAGCAACGACGTGCTCGAGCTGTTCAACCGGATGCCCGACCTGCACGCGGTCGCGCTCGTCGAGCGCGGGCGGCCG
GTCGCGCTCGTGAATCGGCGCGGCTTCATCGACCGCTTCGCGCTGCCGTATCACCGCGAGGTGTTCGGCAAGAAACCGTG
CCTGCAGTTCGCGAACGACGCGCCGCTGATGATCGACAACGCGACCACCTTCGAACAGCTCGCGATGCTGCTCGCGAGCC
ACGACCAGCGCTATCTCGCCGACGGCTTCGTGATCACCGAGCACGGCCGCTATGTCGGGCTCGGCACCGGCGAGAGCCTG
GTACGCGCGGTGACCGAGATGCGCATCGAGGCCGCGCGCTACGCGAATCCGCTGACCTTCCTGCCCGGCAACATCCCGAT
CAGCGCGCACATCGACCGCCTGCTCCAGCGCGACGCCGGCTTTCACGCGTGCTACGTCGACCTGAACCAGTTCAAGCCGT
TCAACGACCAGTACGGCTACTGGCAGGGCGACGAAGTGCTGAAGTTCGCCGCGACGGTGCTGGCCGGCGTGTGCGATCCG
CAACGCGACTTTCTCGGCCACGTCGGCGGCGACGATTTCCTCGTGCTGTTCCAGCGCGACGACTGGCGCGAGCGCGCCGC
CGACGCGATCGCGCGCTTCAACGACGGCGCGCAACTCTTCTACACGCAGGTCGACCGGCAGGCGGGCGGGCTGCGCGGCG
AGGACCGCCACGGCAATCCGGCGTTCTTCGGCTTCGTGACGATGGCGATCGGCGCGGTCGGCGTGCCGGCCGGCGCGCAC
GGCGCGAAACGCTACGGCAGCGACGAGATCGCGTCGGTCGCGGCGCTCGCGAAGCGGCGGGCGAAGCAGCAACCGGACGG
GCTCGCGGTGGTCGATCTCGATGCCGGCCGCGCCGCGCTGCGCGATCGCGGCGAACCGCCGGCCGTGGCGGTGGCGGGCT
GA

Upstream 100 bases:

>100_bases
ATACACCGGCAACGCCCCCTCGTGTCACGAAATCTTCATTCAACTCTCCGCGAGCGGTGCCGTTAAGCCGGGCGTCCCGT
CGATTCGGCTGCCCTCGCCC

Downstream 100 bases:

>100_bases
ACGGCGCGCTAGTCGCCGGGGATGCACGGAACACGGAAGCACCTGCGCATCGTGCGACGGGGCCGATGCGAGGCGGCGCA
AGGTTCGGCCGTTGCGCAAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MPALPSDSAVARTTRLIAERALAAVFQPIVDLGSGTVIGYEGLIRGPRGTDLEPPAALFAQAARDGETIALERAAALTCL
DAFAALGCDGKLFLNFSAGTILTLASERERARQFLGRARIGAERIVIELTEQNAIPDLADIGPAVASLRDAGIQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAHASGAKLIAEGIENECDLIVVRDMGICCVQGFLLG
RPNAQPSRVVAPAARDAIRAPHIAVFPGVTRAVRPAGTIAGKMLVPAPALPRDATSNDVLELFNRMPDLHAVALVERGRP
VALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRDDWRERAADAIARFNDGAQLFYTQVDRQAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRDRGEPPAVAVAG

Sequences:

>Translated_613_residues
MPALPSDSAVARTTRLIAERALAAVFQPIVDLGSGTVIGYEGLIRGPRGTDLEPPAALFAQAARDGETIALERAAALTCL
DAFAALGCDGKLFLNFSAGTILTLASERERARQFLGRARIGAERIVIELTEQNAIPDLADIGPAVASLRDAGIQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAHASGAKLIAEGIENECDLIVVRDMGICCVQGFLLG
RPNAQPSRVVAPAARDAIRAPHIAVFPGVTRAVRPAGTIAGKMLVPAPALPRDATSNDVLELFNRMPDLHAVALVERGRP
VALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRDDWRERAADAIARFNDGAQLFYTQVDRQAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRDRGEPPAVAVAG
>Mature_612_residues
PALPSDSAVARTTRLIAERALAAVFQPIVDLGSGTVIGYEGLIRGPRGTDLEPPAALFAQAARDGETIALERAAALTCLD
AFAALGCDGKLFLNFSAGTILTLASERERARQFLGRARIGAERIVIELTEQNAIPDLADIGPAVASLRDAGIQFALDDYG
TANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVKAMQHFAHASGAKLIAEGIENECDLIVVRDMGICCVQGFLLGR
PNAQPSRVVAPAARDAIRAPHIAVFPGVTRAVRPAGTIAGKMLVPAPALPRDATSNDVLELFNRMPDLHAVALVERGRPV
ALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDNATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLV
RAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDPQ
RDFLGHVGGDDFLVLFQRDDWRERAADAIARFNDGAQLFYTQVDRQAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAHG
AKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAALRDRGEPPAVAVAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=26.2096774193548, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788849, Length=134, Percent_Identity=33.5820895522388, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=27.2340425531915, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1786507, Length=225, Percent_Identity=28.4444444444444, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082096, Length=137, Percent_Identity=29.1970802919708, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=26.271186440678, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI226510982, Length=231, Percent_Identity=29.004329004329, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081980, Length=121, Percent_Identity=29.7520661157025, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 66179; Mature: 66048

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALPSDSAVARTTRLIAERALAAVFQPIVDLGSGTVIGYEGLIRGPRGTDLEPPAALFA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCCCCHHHHHH
QAARDGETIALERAAALTCLDAFAALGCDGKLFLNFSAGTILTLASERERARQFLGRARI
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHC
GAERIVIELTEQNAIPDLADIGPAVASLRDAGIQFALDDYGTANASMNLWLRLHPDVVKI
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVKAMQHFAHASGAKLIAEGIENECDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHCC
RPNAQPSRVVAPAARDAIRAPHIAVFPGVTRAVRPAGTIAGKMLVPAPALPRDATSNDVL
CCCCCCCCEECHHHHHHHCCCCEEECCCCHHHHCCCHHHCCCEEECCCCCCCCCCCHHHH
ELFNRMPDLHAVALVERGRPVALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDN
HHHHHCCCCEEHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLVRAVTEMRIEAARYANPLTF
CCHHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRDDWRERAADAIARFNDGAQLFYTQVDRQAGGLRGEDRHGNP
CHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RDRGEPPAVAVAG
HCCCCCCEEEECC
>Mature Secondary Structure 
PALPSDSAVARTTRLIAERALAAVFQPIVDLGSGTVIGYEGLIRGPRGTDLEPPAALFA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCCCCHHHHHH
QAARDGETIALERAAALTCLDAFAALGCDGKLFLNFSAGTILTLASERERARQFLGRARI
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHC
GAERIVIELTEQNAIPDLADIGPAVASLRDAGIQFALDDYGTANASMNLWLRLHPDVVKI
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVKAMQHFAHASGAKLIAEGIENECDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHCC
RPNAQPSRVVAPAARDAIRAPHIAVFPGVTRAVRPAGTIAGKMLVPAPALPRDATSNDVL
CCCCCCCCEECHHHHHHHCCCCEEECCCCHHHHCCCHHHCCCEEECCCCCCCCCCCHHHH
ELFNRMPDLHAVALVERGRPVALVNRRGFIDRFALPYHREVFGKKPCLQFANDAPLMIDN
HHHHHCCCCEEHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATTFEQLAMLLASHDQRYLADGFVITEHGRYVGLGTGESLVRAVTEMRIEAARYANPLTF
CCHHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLQRDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRDDWRERAADAIARFNDGAQLFYTQVDRQAGGLRGEDRHGNP
CHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAKRYGSDEIASVAALAKRRAKQQPDGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RDRGEPPAVAVAG
HCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]