| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yfeH [C]
Identifier: 116690988
GI number: 116690988
Start: 3282793
End: 3283824
Strand: Direct
Name: yfeH [C]
Synonym: Bcen2424_2970
Alternate gene names: 116690988
Gene position: 3282793-3283824 (Clockwise)
Preceding gene: 116690983
Following gene: 116690989
Centisome position: 94.23
GC content: 69.77
Gene sequence:
>1032_bases ATGGCCCGTCCCCGTTTTCTGCCCGACAACTTCACGCTCGCGCTCGTCGGCACCGTCGTGCTCGCGAGCCTGCTGCCCTG CCGCGGCCCGGCCGCCCATGCGTTCAACTGGGCGACCAACCTCGCCGTCGGCCTGCTGTTCTTCCTGCACGGCGCCAAAC TGTCGCGCGAAGCCGTCGTTGCCGGCGCGACGCACTGGCGGCTGCACGCGGTCGTGCTGCTCAGCACGTTCGCGCTGTTT CCGCTGCTCGGCCTCGCGCTGAAACCCGTGCTGCAGCCGCTCGTCACGCCGACGCTGTATGCGGGCGTGCTGTTCCTGTG CACGCTGCCGTCGACGGTCCAGTCGTCGATCGCGTTCACGTCGATCGCCAAGGGCAACGTGCCGGCCGCCGTGTGCGCGG CCTCCGCGTCGAGCCTGCTCGGGATCTTCGTCACGCCGGCGCTCGTCGGGCTGATGATCACGTCGCAGTCGGCCGCCGCG GCGTCGCCATGGAGCACCGTCGGCAGCATCGTGATGCAGCTGCTCGTGCCGTTCATCGCCGGCCAGTTGCTGCGGCCCGT GATCGGCGGCTGGATCGACCGCAATCGCGGCGTGCTGCGCTTCGTCGACCAGGGCTCGATCCTGCTGGTCGTCTACGTCG CGTTCAGCGAGGCCGTCAACGAAGGGCTGTGGCACCAGATTCCGCCGCGCGCGCTCGGCGGCCTGCTGGTCGTCAACCTC GTGCTGCTGGCAATCGCGCTGCTGCTGACCGCGTTCGTCAGCAAGCGGCTCGGCTTCAACCGCGCGGACCAGATCACGAT CATCTTCTGCGGCTCGAAGAAGAGCCTCGCGGCCGGCGTGCCGATGGCGAAGGTGATCTTCTCGGCGAACGCGGTCGGCG CGATCGTGCTGCCGCTGATGCTGTTCCACCAGATCCAGCTGATGGCGTGCGCGGCGCTCGCGCAGCGCTGGGGCGCACGC GACACGAGCGGCGAGCACGACGAGGGCGACACGGCAGGCGCGTCGGGTGCGCTGAGCACGGGCAAGCGCTGA
Upstream 100 bases:
>100_bases CGATTCGCACAATGAATTTGTGTAGTGAATCGCCAACCGGGACAATAACGCCATCCGCGCGCGCGACGCGCGCCTTCGCC ATTTCCGAATCGAGTTCCCG
Downstream 100 bases:
>100_bases CGCGTCGGGGGGGCAGGAGGGCCGCCGGTGGCGGCCTTCCGCCTCCCGCCTTCCTCACCCGGCCCTCCGCCTTTCACACG CAGCTTCCCGTGCGCCCCCT
Product: bile acid:sodium symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MARPRFLPDNFTLALVGTVVLASLLPCRGPAAHAFNWATNLAVGLLFFLHGAKLSREAVVAGATHWRLHAVVLLSTFALF PLLGLALKPVLQPLVTPTLYAGVLFLCTLPSTVQSSIAFTSIAKGNVPAAVCAASASSLLGIFVTPALVGLMITSQSAAA ASPWSTVGSIVMQLLVPFIAGQLLRPVIGGWIDRNRGVLRFVDQGSILLVVYVAFSEAVNEGLWHQIPPRALGGLLVVNL VLLAIALLLTAFVSKRLGFNRADQITIIFCGSKKSLAAGVPMAKVIFSANAVGAIVLPLMLFHQIQLMACAALAQRWGAR DTSGEHDEGDTAGASGALSTGKR
Sequences:
>Translated_343_residues MARPRFLPDNFTLALVGTVVLASLLPCRGPAAHAFNWATNLAVGLLFFLHGAKLSREAVVAGATHWRLHAVVLLSTFALF PLLGLALKPVLQPLVTPTLYAGVLFLCTLPSTVQSSIAFTSIAKGNVPAAVCAASASSLLGIFVTPALVGLMITSQSAAA ASPWSTVGSIVMQLLVPFIAGQLLRPVIGGWIDRNRGVLRFVDQGSILLVVYVAFSEAVNEGLWHQIPPRALGGLLVVNL VLLAIALLLTAFVSKRLGFNRADQITIIFCGSKKSLAAGVPMAKVIFSANAVGAIVLPLMLFHQIQLMACAALAQRWGAR DTSGEHDEGDTAGASGALSTGKR >Mature_342_residues ARPRFLPDNFTLALVGTVVLASLLPCRGPAAHAFNWATNLAVGLLFFLHGAKLSREAVVAGATHWRLHAVVLLSTFALFP LLGLALKPVLQPLVTPTLYAGVLFLCTLPSTVQSSIAFTSIAKGNVPAAVCAASASSLLGIFVTPALVGLMITSQSAAAA SPWSTVGSIVMQLLVPFIAGQLLRPVIGGWIDRNRGVLRFVDQGSILLVVYVAFSEAVNEGLWHQIPPRALGGLLVVNLV LLAIALLLTAFVSKRLGFNRADQITIIFCGSKKSLAAGVPMAKVIFSANAVGAIVLPLMLFHQIQLMACAALAQRWGARD TSGEHDEGDTAGASGALSTGKR
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=304, Percent_Identity=27.3026315789474, Blast_Score=105, Evalue=8e-23, Organism=Escherichia coli, GI1788749, Length=330, Percent_Identity=53.3333333333333, Blast_Score=317, Evalue=7e-88, Organism=Saccharomyces cerevisiae, GI6323677, Length=353, Percent_Identity=22.3796033994334, Blast_Score=80, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 35901; Mature: 35770
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPRFLPDNFTLALVGTVVLASLLPCRGPAAHAFNWATNLAVGLLFFLHGAKLSREAVV CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AGATHWRLHAVVLLSTFALFPLLGLALKPVLQPLVTPTLYAGVLFLCTLPSTVQSSIAFT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SIAKGNVPAAVCAASASSLLGIFVTPALVGLMITSQSAAAASPWSTVGSIVMQLLVPFIA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GQLLRPVIGGWIDRNRGVLRFVDQGSILLVVYVAFSEAVNEGLWHQIPPRALGGLLVVNL HHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VLLAIALLLTAFVSKRLGFNRADQITIIFCGSKKSLAAGVPMAKVIFSANAVGAIVLPLM HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCHHHHHHHCCHHHHHHHHHH LFHQIQLMACAALAQRWGARDTSGEHDEGDTAGASGALSTGKR HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ARPRFLPDNFTLALVGTVVLASLLPCRGPAAHAFNWATNLAVGLLFFLHGAKLSREAVV CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AGATHWRLHAVVLLSTFALFPLLGLALKPVLQPLVTPTLYAGVLFLCTLPSTVQSSIAFT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SIAKGNVPAAVCAASASSLLGIFVTPALVGLMITSQSAAAASPWSTVGSIVMQLLVPFIA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GQLLRPVIGGWIDRNRGVLRFVDQGSILLVVYVAFSEAVNEGLWHQIPPRALGGLLVVNL HHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VLLAIALLLTAFVSKRLGFNRADQITIIFCGSKKSLAAGVPMAKVIFSANAVGAIVLPLM HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCHHHHHHHCCHHHHHHHHHH LFHQIQLMACAALAQRWGARDTSGEHDEGDTAGASGALSTGKR HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]