| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690808
Identifier: 116690808
GI number: 116690808
Start: 3085350
End: 3085964
Strand: Direct
Name: 116690808
Synonym: Bcen2424_2788
Alternate gene names: NA
Gene position: 3085350-3085964 (Clockwise)
Preceding gene: 116690807
Following gene: 116690809
Centisome position: 88.56
GC content: 66.5
Gene sequence:
>615_bases ATGAGCACGCATTTCCGCTGGACCCAGATGCTGCCGCTCGCCGCGGTCGCCGCGCTCGCAGGCGTCACGTGGTGGCTGCT GCAGGCCACGCTGCCCCCGCCCGGCGAGGGCATCGCGCAGCCGAAGCGCCACACGCCCGACTATTTCGCGGACAACTTCT CGGTCACCGAGCTCGACCAGACCGGCACGACCCAGTACCGGCTGACGGCCGCGAAGCTGGTCCATTACGAAGACACCGAA GGCAGCGACCTGACCGATCCGGCCATGCGCGCGTTCCAGCCCGGCAAGCCGGTCGTGACGACCACCGCGAAGCGCGGCAC CGTCAACGGCGACGTGTCGATCGTCGATTTGTACGACGATGCGCGCATCCTGCGCGCGGCCGGCGGCGGCGACCCGCAGA TGCAGGCCGATTCCCAGCATTTCCGGATCTTCGTCAATGACGATGTGATCCAGACCGAAAAGCCGGTTAAACTTCAGCGC GGCCTGTCGCTCGTCAACGCGACCGACGGCATGAAGTACAACAACGTCACCCGGGTCATCGAGCTTTACGGCAACGTGCG CGGCACGATCGCCGCGGCGGACACGTCCGGCGGCTCGAAAGGTCAACCCAAGTGA
Upstream 100 bases:
>100_bases CCGCGGCGGCCACGGCGCCGTGCGCGAGGTCTGCGATGCGATCCTGCGCGCGCAGCGCCGCTACGACGCGCTGCTCGCCG CCGCCTGCGGAGCCTGACCG
Downstream 100 bases:
>100_bases CGCATCCCTCACGTGACTGCATGAACGAACCGTTCCCTCGACAGATTTCCGGCGGCGCTGCGCGCGCCGTCCGCGCCGCG CTCGCCGCGACGCTCGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSTHFRWTQMLPLAAVAALAGVTWWLLQATLPPPGEGIAQPKRHTPDYFADNFSVTELDQTGTTQYRLTAAKLVHYEDTE GSDLTDPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRAAGGGDPQMQADSQHFRIFVNDDVIQTEKPVKLQR GLSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQPK
Sequences:
>Translated_204_residues MSTHFRWTQMLPLAAVAALAGVTWWLLQATLPPPGEGIAQPKRHTPDYFADNFSVTELDQTGTTQYRLTAAKLVHYEDTE GSDLTDPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRAAGGGDPQMQADSQHFRIFVNDDVIQTEKPVKLQR GLSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQPK >Mature_203_residues STHFRWTQMLPLAAVAALAGVTWWLLQATLPPPGEGIAQPKRHTPDYFADNFSVTELDQTGTTQYRLTAAKLVHYEDTEG SDLTDPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDDARILRAAGGGDPQMQADSQHFRIFVNDDVIQTEKPVKLQRG LSLVNATDGMKYNNVTRVIELYGNVRGTIAAADTSGGSKGQPK
Specific function: Unknown
COG id: COG3117
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22161; Mature: 22030
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTHFRWTQMLPLAAVAALAGVTWWLLQATLPPPGEGIAQPKRHTPDYFADNFSVTELDQ CCCCCCHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHCCCCEEEEECC TGTTQYRLTAAKLVHYEDTEGSDLTDPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDD CCCCEEEEEEEEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCC ARILRAAGGGDPQMQADSQHFRIFVNDDVIQTEKPVKLQRGLSLVNATDGMKYNNVTRVI CEEEEECCCCCCCCCCCCCEEEEEECCCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHH ELYGNVRGTIAAADTSGGSKGQPK HHHCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure STHFRWTQMLPLAAVAALAGVTWWLLQATLPPPGEGIAQPKRHTPDYFADNFSVTELDQ CCCCCHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHCCCCEEEEECC TGTTQYRLTAAKLVHYEDTEGSDLTDPAMRAFQPGKPVVTTTAKRGTVNGDVSIVDLYDD CCCCEEEEEEEEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCC ARILRAAGGGDPQMQADSQHFRIFVNDDVIQTEKPVKLQRGLSLVNATDGMKYNNVTRVI CEEEEECCCCCCCCCCCCCEEEEEECCCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHH ELYGNVRGTIAAADTSGGSKGQPK HHHCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA