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The map label for this gene is abgR [H]

Identifier: 116690604

GI number: 116690604

Start: 2860377

End: 2861288

Strand: Direct

Name: abgR [H]

Synonym: Bcen2424_2584

Alternate gene names: 116690604

Gene position: 2860377-2861288 (Clockwise)

Preceding gene: 116690599

Following gene: 116690605

Centisome position: 82.1

GC content: 69.85

Gene sequence:

>912_bases
ATGACTTTCGATCTCCGACAGTTGCGTGCGTTCACCACGATCGTCGCGTGCGGCAGCCTCGGCCGCGCGGCCGACGCGCT
GCACGTCACGCAGCCGGCGCTGAGCCGGATCCTGAAGCGGCTCGAGGATCAGGTCGGCGCGCCGCTGTTCGAACGCCATT
CGAAGGGCGTGCAGCTCACCGCGTTCGGCGAAGCGTTGCTGCCGCACGCGACGCTGCTGCAGCACGAGGCCGAGCATGCG
CGCGAGGAACTGGACGCGATGCGCGGGCTCGCGAAGGGCACGATCAAGGTCGGCACGGTGGGCAGCATCGCGAGCCTCGT
GTTGCCGGTCGCGGTCGGCCGCGTGCTCGATCGCTGGCCGAACCTGCGCGTCGAAATCATCGAAGGCGTGTGGGACCGGC
TCGCGGAAGGGCTGATCAAGCACGAGATCGATCTTGCGCTGTCCGCGCACGGGCCCGATACCGACGAGATCGTCGCGATT
CCCGAGTGCCGCTGGGAAGACCGCAGCCATATCGTTGCGGCGCCGCACCATCCGCTGCGCGTGCTCGGCCGCCCGCCGAC
GCTCGCCGATACGCTGCACGCACGCTGGGCGATTCCGCCGCGCGGCACCGCGCCGTTCGACCACATGCGCGCGACCTTCG
ACGCACACGGGCTGCCGTTGCCCGACATCGCGGTCGAGACGCGCTCGGTCACGACGCTGAAAAGCCTGGTCGCGCATGCG
GGATTCCTCTGCTGGATGGCCGAACCGATGTACGGGGCGGAACGACGCGCCGGCACGATCGACACGCTGCCCGTGCGCGA
AGTCGTCGCAGTGCGCACGCTCACCGCGTTCCGGCGCCGTCACGGCATCCTCCCCGGGCCGACCGGCAAGCTGCTCGACG
AACTCGTCGCACTCACGCGCGAAGGGCGCTGA

Upstream 100 bases:

>100_bases
TGCTCGGGCGTCTCCTCGATGGCTTGGCGGTTTCCACAGTATCGAAGCGCAAGCCATTCACGGATACTGTATTTTTTGCG
CAAAGCCATTACGTTCCAGC

Downstream 100 bases:

>100_bases
CGCCCTTTTCCAGCGGCTCCCCGCGCCCGCCCTGCCCGCACGGCGCCGCAGCGCACCATCGAAATGCCGTGTCCCCGCCT
TGACTTTCGTCCGCCTGAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHA
REELDAMRGLAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLIKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRVLGRPPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLPLPDIAVETRSVTTLKSLVAHA
GFLCWMAEPMYGAERRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPTGKLLDELVALTREGR

Sequences:

>Translated_303_residues
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHA
REELDAMRGLAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLIKHEIDLALSAHGPDTDEIVAI
PECRWEDRSHIVAAPHHPLRVLGRPPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLPLPDIAVETRSVTTLKSLVAHA
GFLCWMAEPMYGAERRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPTGKLLDELVALTREGR
>Mature_302_residues
TFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLTAFGEALLPHATLLQHEAEHAR
EELDAMRGLAKGTIKVGTVGSIASLVLPVAVGRVLDRWPNLRVEIIEGVWDRLAEGLIKHEIDLALSAHGPDTDEIVAIP
ECRWEDRSHIVAAPHHPLRVLGRPPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLPLPDIAVETRSVTTLKSLVAHAG
FLCWMAEPMYGAERRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPTGKLLDELVALTREGR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=28.5211267605634, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081904, Length=262, Percent_Identity=29.7709923664122, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=27.9503105590062, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789506, Length=276, Percent_Identity=27.536231884058, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=26.1904761904762, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=27.8409090909091, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788296, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994962, Length=160, Percent_Identity=30, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788887, Length=156, Percent_Identity=31.4102564102564, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=30.9210526315789, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789639, Length=136, Percent_Identity=27.2058823529412, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=184, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788626, Length=152, Percent_Identity=30.9210526315789, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790208, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786508, Length=194, Percent_Identity=27.8350515463918, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=24.5283018867925, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33201; Mature: 33070

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLT
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGEALLPHATLLQHEAEHAREELDAMRGLAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEIIEGVWDRLAEGLIKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCCHH
VLGRPPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLPLPDIAVETRSVTTLKSLVAHA
HCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFLCWMAEPMYGAERRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPTGKLLDELVALTR
HHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
EGR
CCC
>Mature Secondary Structure 
TFDLRQLRAFTTIVACGSLGRAADALHVTQPALSRILKRLEDQVGAPLFERHSKGVQLT
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AFGEALLPHATLLQHEAEHAREELDAMRGLAKGTIKVGTVGSIASLVLPVAVGRVLDRWP
EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVEIIEGVWDRLAEGLIKHEIDLALSAHGPDTDEIVAIPECRWEDRSHIVAAPHHPLR
CCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCCHH
VLGRPPTLADTLHARWAIPPRGTAPFDHMRATFDAHGLPLPDIAVETRSVTTLKSLVAHA
HCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GFLCWMAEPMYGAERRAGTIDTLPVREVVAVRTLTAFRRRHGILPGPTGKLLDELVALTR
HHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
EGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]