| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690441
Identifier: 116690441
GI number: 116690441
Start: 2685510
End: 2685923
Strand: Direct
Name: 116690441
Synonym: Bcen2424_2421
Alternate gene names: NA
Gene position: 2685510-2685923 (Clockwise)
Preceding gene: 116690440
Following gene: 116690442
Centisome position: 77.08
GC content: 68.36
Gene sequence:
>414_bases ATGTTCCACACCGTCGAAGACACTGCCGCCCGCTTGCGCGTCCATCCGAAGACCGTCCTGCGGTTCATTCGCGACGGCAA GCTGCGCGCGACGCGGGTCGGCCGTGCCTACCGCATCCTCGAGGCCGACCTCGCCGCGTTCGCCCGGACGGAGCCGGCCT CGCCCGCGCCGCGTGCGGTGCGCGTCACCAGCATCGTCGACATTCCCGATGCGTCGCAGTCGCTGCACCAGTACCTGTCG CGGTCGCTGCACGCGTTGGCGTCCGGCCGCACATCGTACGTCGACCCCGTGCGAATCGACGTCACGTTCGATCCCGCCTC GAGCATGGTCAAGATCATCGTGACCGCGACACCGGCCGACACGGCCGCGCTGATGTCGTCGCTCGACATGCTGCTGCAGC AAAGCGGGACATGA
Upstream 100 bases:
>100_bases TCTCGCCCATCCGACGGCAGCCCCTTTATCACCCAAATTATTCCCTTATGCTCCTTTATATATGGAACAATAAAGATAAT TAAGGAATCGTCGATAGCTC
Downstream 100 bases:
>100_bases GCGCAATCTTCAAGTCATCCCGCCATGCCCGCGCGATTCGCGCCGCGTACGCGGCCGCGCTGTCGCACTGGCCGGCCGGG CATCGGCGCGTCACCGTGCA
Product: DNA binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MFHTVEDTAARLRVHPKTVLRFIRDGKLRATRVGRAYRILEADLAAFARTEPASPAPRAVRVTSIVDIPDASQSLHQYLS RSLHALASGRTSYVDPVRIDVTFDPASSMVKIIVTATPADTAALMSSLDMLLQQSGT
Sequences:
>Translated_137_residues MFHTVEDTAARLRVHPKTVLRFIRDGKLRATRVGRAYRILEADLAAFARTEPASPAPRAVRVTSIVDIPDASQSLHQYLS RSLHALASGRTSYVDPVRIDVTFDPASSMVKIIVTATPADTAALMSSLDMLLQQSGT >Mature_137_residues MFHTVEDTAARLRVHPKTVLRFIRDGKLRATRVGRAYRILEADLAAFARTEPASPAPRAVRVTSIVDIPDASQSLHQYLS RSLHALASGRTSYVDPVRIDVTFDPASSMVKIIVTATPADTAALMSSLDMLLQQSGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14945; Mature: 14945
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFHTVEDTAARLRVHPKTVLRFIRDGKLRATRVGRAYRILEADLAAFARTEPASPAPRAV CCCCCCCHHHHEEECHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE RVTSIVDIPDASQSLHQYLSRSLHALASGRTSYVDPVRIDVTFDPASSMVKIIVTATPAD EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCH TAALMSSLDMLLQQSGT HHHHHHHHHHHHHCCCC >Mature Secondary Structure MFHTVEDTAARLRVHPKTVLRFIRDGKLRATRVGRAYRILEADLAAFARTEPASPAPRAV CCCCCCCHHHHEEECHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE RVTSIVDIPDASQSLHQYLSRSLHALASGRTSYVDPVRIDVTFDPASSMVKIIVTATPAD EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCH TAALMSSLDMLLQQSGT HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA