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The map label for this gene is skp [H]

Identifier: 116690031

GI number: 116690031

Start: 2225881

End: 2226378

Strand: Reverse

Name: skp [H]

Synonym: Bcen2424_2010

Alternate gene names: 116690031

Gene position: 2226378-2225881 (Counterclockwise)

Preceding gene: 116690032

Following gene: 116690030

Centisome position: 63.9

GC content: 65.46

Gene sequence:

>498_bases
ATGTGCGCGCTGACCGTTGCGCTGGCCCTGGGCGCGGCAACGGTGCACGCACAGGACGTCGCCCGCATCGCGGCGGTCAA
TTCGGATCGGATCCTGCGCGAGTCGGCGCCCGCCAAGGCGGCGCAGACGAAGCTCGAAGCCGAGTTCGCGAAGCGTGACA
AGGATCTGCAGGACCTGGCGGCGCGTCTGAAGTCGATGTCCGATTCGCTGGACAAGAACGGCGCGTCGCTGTCGGCGGCC
GATCGCGCGCAGAAGCAGCGCGATCTGGCGCAGCTCGACACCGACTTCCAGCGCAAGCAGCGCGAGTTCCGCGAAGACCT
GAACCAGCGTCGCAACGAAGAGCTGGCGGCCGTGCTGGAAAAGGCGAACAAGGTCATCAAGCAGATCGCCGAGCAGCAGA
ATTACGACCTGATCGTGCAGGAAGCCGTGTACGTCAGCCCGCGCATCGACATCACCGACAAGGTGCTCAAGGCGCTCGCG
TCCGGCTCGACGAACTGA

Upstream 100 bases:

>100_bases
CAGAAATTCCAGTTCCAGATCGGGACGGCGTTCTGACCGAACGCATGACAACAGCAACGAGAGGGTAATTTTGCTAACCG
GTAAGTTTTCGAAACGAGTG

Downstream 100 bases:

>100_bases
ACGGAGCAGACGACGAATGGCATTGACGCTTGAGGAACTCGTAAAACGGTTCGGCGGCGAGATCGCCGGCGACGCACAGT
GCAAGGTGGGCGGGCTCGCA

Product: outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLEKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN

Sequences:

>Translated_165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLEKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN
>Mature_165_residues
MCALTVALALGAATVHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLAARLKSMSDSLDKNGASLSAA
DRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLEKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA
SGSTN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18192; Mature: 18192

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCALTVALALGAATVHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
ARLKSMSDSLDKNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCALTVALALGAATVHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
ARLKSMSDSLDKNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]