| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is pucI [H]
Identifier: 116689986
GI number: 116689986
Start: 2183186
End: 2184670
Strand: Reverse
Name: pucI [H]
Synonym: Bcen2424_1965
Alternate gene names: 116689986
Gene position: 2184670-2183186 (Counterclockwise)
Preceding gene: 116689987
Following gene: 116689985
Centisome position: 62.71
GC content: 64.92
Gene sequence:
>1485_bases ATGGCTCAGTTCAGTGTGGCGCACGACAGCGCCTATCCGGCGGAAGAAGGCGGCGAGGGCGGCGGTCCGGCACTGCCGGA TGGTTACAGCGAACGTCTGTACAACGAAGATTTGGCACCCCTTAAAAATCAGACATGGGGTTCGTACAACATCTTCGCGT TCTGGATGTCGGACGTGCACAGCGTCGGCGGCTACGTGTTCGCGGGCAGTCTGTTTGCGCTCGGGCTGACGAGCTGGCAA GTGCTGATCGCGCTGATCGTCGGCATCGGCCTCGTGAACGCGCTGTGCAACCTGATCGCGCGGCCGAGCCAGCAGATCGG CGTGCCGTACCCGGTCGCGTGCCGCGCGACCTTCGGCGTGCTCGGCGCGAACGTGCCGGCCGTGATCCGCGGGCTGATCG CGATCGCGTGGTACGGCATCCAGACTTATCTCGCGTCGAGCGCGCTCGTGATCGTCGTGCTGAAATTCTTCCCGCAATGG CTGCCGTATGCGGACGTCCATCGCTACGGCTTCCTCGGGCTGTCGGCGGTCGGCTGGGCCGGCTTCATGCTGCTGTGGGT GCTCCAGGCGTTCGTGTTCTGGAACGGCATGGAGACGATCAAGAAGTTCATCGACTTCGCGGGCCCGGCCGTCTATGTCG TGATGTTCATCCTGGCCGGTTACATGGTGTGGCGCGCGGGCTGGCGCAACATCGGCATCAACCTCGGCGGCGTCAAGTAT TACGGCGCGGAAGTGATTCCGGTGATGATCACCGCAGTGTCGCTCGTCGTGTCGTACTTCTCCGGGCCGATGCTGAACTT CGGCGATTTCTCGCGCTACTGCCGCTCGTTCGGCGACGTGAAGCGCGGCAATTTCTGGGGGCTGCCGGTCAACTTTCTCG CGTTCTCGCTCGTCACGGTGATCACCACCGCCGCGACGCTGCCGGTGTTCGGCGAACTGATCACCGACCCGGTCGCGACG GTCGGCCGCATCGACCATCCGACCGCGGTGATCCTCGGCGCGCTGACGTTCACGATCGCGACGATCGGCATCAACATCGT CGCGAACTTCGTATCGCCCGCGTTCGATTTCTCGAACGTCGCGCCGCGCCTGATCAGCTGGCGCGCAGGCGGGATGCTCG CCGCCGTCGCGTCGATCTTCATCACGCCGTGGAACCTGTTCAACAACCCGGCCGTGATCCACTACACGCTCGACGTGCTC GGCGCGTTCATCGGCCCGCTGTACGGCGTGCTGATCGCCGATTTCTACCTCGTCAAGCGTGGCCGCCTCGTGCGCGACGA CCTGTACACGATGTCGGAAAGCGGCGCCTATTGGTACACGGGCGGCGTGAACCGCCGCGCGCTCGCCGCGCTGCTGCCGG CCGCGGTGATCGCGGTGGTCTGCGTGATGGTGCCGGGCTGGCAGGCCCTCGCGAATTTCTCGTGGTTCATCGGCGCGGGG CTCGGCTTCGTGTTCTACCGGCTGCTCGCGAGCGCGAAGGCGTAA
Upstream 100 bases:
>100_bases CTGCGGTGTTTGCCGCGGGCCGCTGGTCCGACTCCGGGCGATGATCCGGAGCGATATCGATGACGGTGGAGCGGCCTGGC GGCCGCGTCAAGGAGAAGTC
Downstream 100 bases:
>100_bases GGAGCATGCGATGAAGATCCGACTGATCAATCCGAATACGACGCAGCGGATGACCGACGCGATGGGCCGCTGCGCGCGCG AGGTCGCGGCCGCCGGCACC
Product: permease for cytosine/purines, uracil, thiamine, allantoin
Products: NA
Alternate protein names: Allantoin transport protein [H]
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MAQFSVAHDSAYPAEEGGEGGGPALPDGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQ VLIALIVGIGLVNALCNLIARPSQQIGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQW LPYADVHRYGFLGLSAVGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKY YGAEVIPVMITAVSLVVSYFSGPMLNFGDFSRYCRSFGDVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVAT VGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVL GAFIGPLYGVLIADFYLVKRGRLVRDDLYTMSESGAYWYTGGVNRRALAALLPAAVIAVVCVMVPGWQALANFSWFIGAG LGFVFYRLLASAKA
Sequences:
>Translated_494_residues MAQFSVAHDSAYPAEEGGEGGGPALPDGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQ VLIALIVGIGLVNALCNLIARPSQQIGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQW LPYADVHRYGFLGLSAVGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKY YGAEVIPVMITAVSLVVSYFSGPMLNFGDFSRYCRSFGDVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVAT VGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVL GAFIGPLYGVLIADFYLVKRGRLVRDDLYTMSESGAYWYTGGVNRRALAALLPAAVIAVVCVMVPGWQALANFSWFIGAG LGFVFYRLLASAKA >Mature_493_residues AQFSVAHDSAYPAEEGGEGGGPALPDGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV LIALIVGIGLVNALCNLIARPSQQIGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWL PYADVHRYGFLGLSAVGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKYY GAEVIPVMITAVSLVVSYFSGPMLNFGDFSRYCRSFGDVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVATV GRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVLG AFIGPLYGVLIADFYLVKRGRLVRDDLYTMSESGAYWYTGGVNRRALAALLPAAVIAVVCVMVPGWQALANFSWFIGAGL GFVFYRLLASAKA
Specific function: Transport of allantoin [H]
COG id: COG1953
COG function: function code FH; Cytosine/uracil/thiamine/allantoin permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Escherichia coli, GI87081749, Length=471, Percent_Identity=29.0870488322718, Blast_Score=196, Evalue=3e-51, Organism=Saccharomyces cerevisiae, GI6319495, Length=482, Percent_Identity=25.7261410788382, Blast_Score=155, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6322219, Length=439, Percent_Identity=23.9179954441913, Blast_Score=142, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6319429, Length=467, Percent_Identity=23.1263383297645, Blast_Score=120, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6323266, Length=470, Percent_Identity=22.9787234042553, Blast_Score=97, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6324766, Length=468, Percent_Identity=22.008547008547, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324645, Length=468, Percent_Identity=20.9401709401709, Blast_Score=88, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 - InterPro: IPR012681 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 53481; Mature: 53350
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQFSVAHDSAYPAEEGGEGGGPALPDGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVH CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHH SVGGYVFAGSLFALGLTSWQVLIALIVGIGLVNALCNLIARPSQQIGVPYPVACRATFGV HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH LGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWLPYADVHRYGFLGLSAVGWA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKY HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCEEECCEEE YGAEVIPVMITAVSLVVSYFSGPMLNFGDFSRYCRSFGDVKRGNFWGLPVNFLAFSLVTV CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ITTAATLPVFGELITDPVATVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNV HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH APRLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVLGAFIGPLYGVLIADFYLVKR HHHHHHHCCCHHHHHHHHHHHCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHC GRLVRDDLYTMSESGAYWYTGGVNRRALAALLPAAVIAVVCVMVPGWQALANFSWFIGAG CCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHH LGFVFYRLLASAKA HHHHHHHHHHHCCC >Mature Secondary Structure AQFSVAHDSAYPAEEGGEGGGPALPDGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVH CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHH SVGGYVFAGSLFALGLTSWQVLIALIVGIGLVNALCNLIARPSQQIGVPYPVACRATFGV HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH LGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWLPYADVHRYGFLGLSAVGWA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH GFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKY HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCEEECCEEE YGAEVIPVMITAVSLVVSYFSGPMLNFGDFSRYCRSFGDVKRGNFWGLPVNFLAFSLVTV CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ITTAATLPVFGELITDPVATVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNV HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH APRLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVLGAFIGPLYGVLIADFYLVKR HHHHHHHCCCHHHHHHHHHHHCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHC GRLVRDDLYTMSESGAYWYTGGVNRRALAALLPAAVIAVVCVMVPGWQALANFSWFIGAG CCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHH LGFVFYRLLASAKA HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377; 11344136 [H]