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The map label for this gene is ydfH [H]

Identifier: 116689987

GI number: 116689987

Start: 2184820

End: 2185524

Strand: Reverse

Name: ydfH [H]

Synonym: Bcen2424_1966

Alternate gene names: 116689987

Gene position: 2185524-2184820 (Counterclockwise)

Preceding gene: 116689988

Following gene: 116689986

Centisome position: 62.73

GC content: 69.22

Gene sequence:

>705_bases
ATGCAGATCATGAACGAGCCCGATTCCACTCCGTCCGGTGCAGCCGGCCCCGAAGCGATCGCCGAGCGGATTCGCACCGC
GATCCTCGAGCATCGGCTCGCGCCGGGCGCGAAGCTGACGGAGGCGCAGCTCTGCGACGTGTTCGGCGTGAAGCGCGGGA
CGATCCGCCAGGCGCTCGCGCAGCTCGCGACCGACAAGCTGGTCGACCTCGAGCCGAACCGCGGCGCGTTCGTCGCGAGC
CCGACGCTGCAGGACGTGCACGAGGTGTTCGAGATGCGCCGGATCATCGAGCTTGCCGTGGTCGAACGGCTCGCGACCGG
CCCCGGCGCCAGGCGGCTGAAGGGCGTCGCCGCGCTGATCGACAAGGAGCGCAAGGCGTTCGAGCGGCACGACTTCGCGG
CATGGATTCGGCTGTCGGGCGAATTCCACACGGCGCTCGCGACGCTGATGGGCAATGCGACGCTCAGCGAGTGCCTCGAA
GGGCTCGTCGCACGCTCGACGCTGATGTCGGCGCTGTACGAATCGCACGGGCGCAGCCCGTGCTCGTGCGACGACCACGA
CGAGATCCTCGCCGCGCTGGAGGCGGGCGATCCGAAGCAGGCGGTCACGCTGATGGCGCGCCACCTGCAGCATGTCGAAC
TGAAGATGCTGGACCGGCCCGCGCAAGGGCAGGTCGATTTGCGCGAAGTGTTCGGCGGCGCCTGA

Upstream 100 bases:

>100_bases
CACCGAATGAGAACACGCTGGCGCACGCCGATTGTGCGAAATGCCGCAAAAGAATTGTTGACAATCTTTATGTCCGCCCT
AGGATGAGGACCATCACACG

Downstream 100 bases:

>100_bases
GCGGCGACGCGAACCCGGCCGCGCGCCACACGACGAGCGCAATGCAGGCCTGCGGTGTTTGCCGCGGGCCGCTGGTCCGA
CTCCGGGCGATGATCCGGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQIMNEPDSTPSGAAGPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALAQLATDKLVDLEPNRGAFVAS
PTLQDVHEVFEMRRIIELAVVERLATGPGARRLKGVAALIDKERKAFERHDFAAWIRLSGEFHTALATLMGNATLSECLE
GLVARSTLMSALYESHGRSPCSCDDHDEILAALEAGDPKQAVTLMARHLQHVELKMLDRPAQGQVDLREVFGGA

Sequences:

>Translated_234_residues
MQIMNEPDSTPSGAAGPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALAQLATDKLVDLEPNRGAFVAS
PTLQDVHEVFEMRRIIELAVVERLATGPGARRLKGVAALIDKERKAFERHDFAAWIRLSGEFHTALATLMGNATLSECLE
GLVARSTLMSALYESHGRSPCSCDDHDEILAALEAGDPKQAVTLMARHLQHVELKMLDRPAQGQVDLREVFGGA
>Mature_234_residues
MQIMNEPDSTPSGAAGPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALAQLATDKLVDLEPNRGAFVAS
PTLQDVHEVFEMRRIIELAVVERLATGPGARRLKGVAALIDKERKAFERHDFAAWIRLSGEFHTALATLMGNATLSECLE
GLVARSTLMSALYESHGRSPCSCDDHDEILAALEAGDPKQAVTLMARHLQHVELKMLDRPAQGQVDLREVFGGA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=196, Percent_Identity=25.5102040816327, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25452; Mature: 25452

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIMNEPDSTPSGAAGPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHH
QLATDKLVDLEPNRGAFVASPTLQDVHEVFEMRRIIELAVVERLATGPGARRLKGVAALI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DKERKAFERHDFAAWIRLSGEFHTALATLMGNATLSECLEGLVARSTLMSALYESHGRSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
CSCDDHDEILAALEAGDPKQAVTLMARHLQHVELKMLDRPAQGQVDLREVFGGA
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MQIMNEPDSTPSGAAGPEAIAERIRTAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHH
QLATDKLVDLEPNRGAFVASPTLQDVHEVFEMRRIIELAVVERLATGPGARRLKGVAALI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DKERKAFERHDFAAWIRLSGEFHTALATLMGNATLSECLEGLVARSTLMSALYESHGRSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
CSCDDHDEILAALEAGDPKQAVTLMARHLQHVELKMLDRPAQGQVDLREVFGGA
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]