| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689921
Identifier: 116689921
GI number: 116689921
Start: 2103676
End: 2104170
Strand: Reverse
Name: 116689921
Synonym: Bcen2424_1900
Alternate gene names: NA
Gene position: 2104170-2103676 (Counterclockwise)
Preceding gene: 116689922
Following gene: 116689920
Centisome position: 60.4
GC content: 61.01
Gene sequence:
>495_bases ATGTCGGTAAGTGGCACGGTGAAAAAGCGGGTATCGTCCCGGAAGATTTCAAACGATGCCCGCTTTTTTCGACCGGGTGC GATTCCGAGCGAACGAGAGCGAACGGCAGGCGGGCGCAAGGTGCCCGACTGGCAAGGGTTCAGGCCAATCGCCGAACCAA CACGAACAGGAGCAACCGAAGTGATCAGACATATCGTCATGTGGAAGTTGAAGGAATCGGCCGAAGGCGCGACGCGTGCG CAGAACGCGCTGAAGCTGAAGGAAAAGCTCGAAGGCTGCCGCGATCTCGTGCCGGGCACCTTGCAGATCGACGTCGGCCT GGCGACGCCGGGCCTCGACGCGACCGCCGACATCGTGCTCGTCTCCGATTTCACCGACAAGGCCGCGCTGGACGCGTACC AGGTGCATCCGGTTCACCAGGAAGTGAAGAAATTCGTCGTCGCGGTGGCCGAATCGCGCGAATGCGTCGACTACATCGTC GACGTCGCACGATGA
Upstream 100 bases:
>100_bases TGCCAGCGGTGACCGAACCCGACGGACGCACCTCAAGAACAGTCCATTGCCGTCGGTAAGTTTGGTAGGCTTGTCGCCTG CCTTCGCTTGTCGGATCTTG
Downstream 100 bases:
>100_bases GCGACGCGGCAACCCCGACGGAAGGCCCGTCGATCGAAAGCCCGTTCGTCGATCTGCTCGGCGTGCAGCTCGTGTCCGCG AAGGATGGTGCGAGCGAAAT
Product: stress responsive alpha-beta barrel domain-containing protein
Products: NA
Alternate protein names: Stress Responsive Alpha-Beta Barrel; Stress Responsive A/B Barrel Domain Protein; Stress Responsive A/B Barrel Domain Family Protein
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MSVSGTVKKRVSSRKISNDARFFRPGAIPSERERTAGGRKVPDWQGFRPIAEPTRTGATEVIRHIVMWKLKESAEGATRA QNALKLKEKLEGCRDLVPGTLQIDVGLATPGLDATADIVLVSDFTDKAALDAYQVHPVHQEVKKFVVAVAESRECVDYIV DVAR
Sequences:
>Translated_164_residues MSVSGTVKKRVSSRKISNDARFFRPGAIPSERERTAGGRKVPDWQGFRPIAEPTRTGATEVIRHIVMWKLKESAEGATRA QNALKLKEKLEGCRDLVPGTLQIDVGLATPGLDATADIVLVSDFTDKAALDAYQVHPVHQEVKKFVVAVAESRECVDYIV DVAR >Mature_163_residues SVSGTVKKRVSSRKISNDARFFRPGAIPSERERTAGGRKVPDWQGFRPIAEPTRTGATEVIRHIVMWKLKESAEGATRAQ NALKLKEKLEGCRDLVPGTLQIDVGLATPGLDATADIVLVSDFTDKAALDAYQVHPVHQEVKKFVVAVAESRECVDYIVD VAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18012; Mature: 17881
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSGTVKKRVSSRKISNDARFFRPGAIPSERERTAGGRKVPDWQGFRPIAEPTRTGATE CCCCHHHHHHHHHHHCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH VIRHIVMWKLKESAEGATRAQNALKLKEKLEGCRDLVPGTLQIDVGLATPGLDATADIVL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEE VSDFTDKAALDAYQVHPVHQEVKKFVVAVAESRECVDYIVDVAR EECCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure SVSGTVKKRVSSRKISNDARFFRPGAIPSERERTAGGRKVPDWQGFRPIAEPTRTGATE CCCHHHHHHHHHHHCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH VIRHIVMWKLKESAEGATRAQNALKLKEKLEGCRDLVPGTLQIDVGLATPGLDATADIVL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEE VSDFTDKAALDAYQVHPVHQEVKKFVVAVAESRECVDYIVDVAR EECCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA