| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689920
Identifier: 116689920
GI number: 116689920
Start: 2103200
End: 2103679
Strand: Reverse
Name: 116689920
Synonym: Bcen2424_1899
Alternate gene names: NA
Gene position: 2103679-2103200 (Counterclockwise)
Preceding gene: 116689921
Following gene: 116689919
Centisome position: 60.38
GC content: 68.12
Gene sequence:
>480_bases ATGAGCGACGCGGCAACCCCGACGGAAGGCCCGTCGATCGAAAGCCCGTTCGTCGATCTGCTCGGCGTGCAGCTCGTGTC CGCGAAGGATGGTGCGAGCGAAATCGTGCTGCCGCTCGAGGAGCGCCACATGAACACGTGGAGCATCGCGCACGGCGGCG TGACGATGACGCTCGCCGATATCGCGCTCGCGATGGCGGCGCGCAGTTTGACCGACGACGGCGTCGGCGTCGTCACGGTC GAGATGAAGGTGAACTTCATGCAGCCGGGCCGCGGCGAGCTGCGCGCCTACGGGCGCGTGATGCACCGCTCGACGACGAT GGCCTATTGCGAAGGCGAAGTGCGCGACAGCGACGGCAATTTCGTCGCGAAGGCGCTCGGTACGTTCAAGTACATGCGGC GGCTCGCGGTCGGCCGCGACATCAAGCGGCAACGCTCGCGCACGGCGCCGGACGCGCAGCCCGGCCCGAGCGACGCGTAA
Upstream 100 bases:
>100_bases ACGCGTACCAGGTGCATCCGGTTCACCAGGAAGTGAAGAAATTCGTCGTCGCGGTGGCCGAATCGCGCGAATGCGTCGAC TACATCGTCGACGTCGCACG
Downstream 100 bases:
>100_bases ACGCTCCCGCCATGCACGGCCCTGTCTCTTCGATGAGGCAGGGCCGTTTCGTTTTGCAGCCCGGATGCCGGCACACCGCG CGCCGCGCCGGTCCGGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSDAATPTEGPSIESPFVDLLGVQLVSAKDGASEIVLPLEERHMNTWSIAHGGVTMTLADIALAMAARSLTDDGVGVVTV EMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSDGNFVAKALGTFKYMRRLAVGRDIKRQRSRTAPDAQPGPSDA
Sequences:
>Translated_159_residues MSDAATPTEGPSIESPFVDLLGVQLVSAKDGASEIVLPLEERHMNTWSIAHGGVTMTLADIALAMAARSLTDDGVGVVTV EMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSDGNFVAKALGTFKYMRRLAVGRDIKRQRSRTAPDAQPGPSDA >Mature_158_residues SDAATPTEGPSIESPFVDLLGVQLVSAKDGASEIVLPLEERHMNTWSIAHGGVTMTLADIALAMAARSLTDDGVGVVTVE MKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSDGNFVAKALGTFKYMRRLAVGRDIKRQRSRTAPDAQPGPSDA
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioesterase PaaI family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003736 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: NA
Molecular weight: Translated: 17113; Mature: 16981
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAATPTEGPSIESPFVDLLGVQLVSAKDGASEIVLPLEERHMNTWSIAHGGVTMTLAD CCCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCEEEEEHHHCCCCEEEEECCCEEHHHHH IALAMAARSLTDDGVGVVTVEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSDGN HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCEEECCCCC FVAKALGTFKYMRRLAVGRDIKRQRSRTAPDAQPGPSDA CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SDAATPTEGPSIESPFVDLLGVQLVSAKDGASEIVLPLEERHMNTWSIAHGGVTMTLAD CCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCEEEEEHHHCCCCEEEEECCCEEHHHHH IALAMAARSLTDDGVGVVTVEMKVNFMQPGRGELRAYGRVMHRSTTMAYCEGEVRDSDGN HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCEEECCCCC FVAKALGTFKYMRRLAVGRDIKRQRSRTAPDAQPGPSDA CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11572479 [H]