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The map label for this gene is cph2 [H]

Identifier: 116689922

GI number: 116689922

Start: 2104302

End: 2105780

Strand: Reverse

Name: cph2 [H]

Synonym: Bcen2424_1901

Alternate gene names: 116689922

Gene position: 2105780-2104302 (Counterclockwise)

Preceding gene: 116689924

Following gene: 116689921

Centisome position: 60.44

GC content: 62.54

Gene sequence:

>1479_bases
ATGCACCCCCGTCGGACTGCCCCTTACGTCATCGTGGCAATTGCTTCCATGATCGCGTGCGCGCTCATGGCGCTATGCGT
GCTGCAACTCTTGCAGAGCCGCGACGACGCGATGGAGCGTGCAAGGGAAACGTCACGCAACCTCGGACTTGTCGCCGAGC
GCGACATCGAACGCAATTTCGAGTTGTACGACCTGTCTTTGCAGGCCGTCATCCATGGGTTGCAGCGCCGCGATGTGATG
GACGCTTCGCCCAGCTTGCGCCGTGCCGTGCTGTTCGATCACGCGATGACCGCGGAATTTCTCGGTTCGATGCTCGTGAT
GGATGCAGGCGGCAATATCGTCCTGGATTCGGGCTATGACGAGCCGCGCAAGGGCAATTTCGCCGATCGCCGATACTTCA
CGATCCACCGCGACAATCCGAACGTCGGACTCTATGTCAGTGACCCATTCGTATCCCGTTTGCGGGGAGGCATGCTCAGT
ATCGCGCTTACGCGGCGGATTTCGAACCCCGATGGATCGTTTGGCGGCATTGCCGTTATTGCGGTCAATCTTGAATATTT
TCATCAGCTCTTCGCCGGGCTTTCGCTTGGCAAACATGGCTCGATTTCGCTGATCGGCGAAGACGGCAAGATGGTGATGC
GTCAGCCGTACGATGTGCATACCATCGGCCGCGACCTCAGCAAGGCCGCAACGTTCCGGCGTTTCCAGACCGCGCGAGAG
GGCTCCTTCTCTGAAACCTCGTCGATCGACGGCGTGCGCCGCCTCTACTACTTCAAGCATTTGCCGAAACTGCCGCTGAT
CATCATGGTCGCGGAGGCCGAGCAGGACATTTACGCCGCCTGGCGGCAACGTGCGATCACGATCGGCGGACTGGTCGCGA
CGTTCGGGGTGGCGTTCATCGCGCTGTCGCTGCTGCTCGGTTCGCAGCTGCGGCGCCGTATGCGAGCCGAGTCGGAACTC
GTGCTGCTCGCCCGGACGGACGGTCTCACCGGCCTGAGCAATCGCCGCAGCTTTGGCGAGGTACTGGACAACGAGTGGCG
TCGCGCCCGGCGTGCGCGTTCCGTTTTCTCGCTGCTGTTCGTGGATGTGGACCGGTTCAAGGCTTACAACGACACGTACG
GTCATCAGGCCGGGGACGATGCGTTGGCGGCGGTCGCGCGGTGCATCGGCGAGAACATTCGCCGGCCGGCCGATACGGCG
GCTCGTTATGGCGGGGAGGAGTTCGTCGTGTTGCTCCCCGACACGTCGCAAACCGGCGCGGCGCAGATCGCCGAGCGGAT
TCGTGCGGCCATCGACGAGTTGGCCCTCGAGCACGCTGGCAGCGAATACGGGCGTGTTACCGCGAGCATTGGCCTGGCGA
GCTGGACGCCCGATCAGGAAGGGCAGCCTGATGCCGTGATCAAGGCGGCTGATGAGGCGCTGTACTACGCGAAGGCGACT
GGTCGGAACAAGGTCGCCGCGTTGCAGCCGGCGGAGTGA

Upstream 100 bases:

>100_bases
AGCCCTTCCAATCGCAGTGAGCGCGAATATCGGCCCAACTGATTTAGTATGAGCAATCTGCGCTCGGCGGGAGGGGCGCT
CATTCCCAGTGAGGAGACCC

Downstream 100 bases:

>100_bases
GGGGGCTGCATCGTGCGTGCCGTCAGACGCGTGCCAGCGGTGACCGAACCCGACGGACGCACCTCAAGAACAGTCCATTG
CCGTCGGTAAGTTTGGTAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MHPRRTAPYVIVAIASMIACALMALCVLQLLQSRDDAMERARETSRNLGLVAERDIERNFELYDLSLQAVIHGLQRRDVM
DASPSLRRAVLFDHAMTAEFLGSMLVMDAGGNIVLDSGYDEPRKGNFADRRYFTIHRDNPNVGLYVSDPFVSRLRGGMLS
IALTRRISNPDGSFGGIAVIAVNLEYFHQLFAGLSLGKHGSISLIGEDGKMVMRQPYDVHTIGRDLSKAATFRRFQTARE
GSFSETSSIDGVRRLYYFKHLPKLPLIIMVAEAEQDIYAAWRQRAITIGGLVATFGVAFIALSLLLGSQLRRRMRAESEL
VLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTA
ARYGGEEFVVLLPDTSQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALYYAKAT
GRNKVAALQPAE

Sequences:

>Translated_492_residues
MHPRRTAPYVIVAIASMIACALMALCVLQLLQSRDDAMERARETSRNLGLVAERDIERNFELYDLSLQAVIHGLQRRDVM
DASPSLRRAVLFDHAMTAEFLGSMLVMDAGGNIVLDSGYDEPRKGNFADRRYFTIHRDNPNVGLYVSDPFVSRLRGGMLS
IALTRRISNPDGSFGGIAVIAVNLEYFHQLFAGLSLGKHGSISLIGEDGKMVMRQPYDVHTIGRDLSKAATFRRFQTARE
GSFSETSSIDGVRRLYYFKHLPKLPLIIMVAEAEQDIYAAWRQRAITIGGLVATFGVAFIALSLLLGSQLRRRMRAESEL
VLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTA
ARYGGEEFVVLLPDTSQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALYYAKAT
GRNKVAALQPAE
>Mature_492_residues
MHPRRTAPYVIVAIASMIACALMALCVLQLLQSRDDAMERARETSRNLGLVAERDIERNFELYDLSLQAVIHGLQRRDVM
DASPSLRRAVLFDHAMTAEFLGSMLVMDAGGNIVLDSGYDEPRKGNFADRRYFTIHRDNPNVGLYVSDPFVSRLRGGMLS
IALTRRISNPDGSFGGIAVIAVNLEYFHQLFAGLSLGKHGSISLIGEDGKMVMRQPYDVHTIGRDLSKAATFRRFQTARE
GSFSETSSIDGVRRLYYFKHLPKLPLIIMVAEAEQDIYAAWRQRAITIGGLVATFGVAFIALSLLLGSQLRRRMRAESEL
VLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTA
ARYGGEEFVVLLPDTSQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALYYAKAT
GRNKVAALQPAE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=37.9310344827586, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=40.3726708074534, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=40.4761904761905, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082007, Length=212, Percent_Identity=37.7358490566038, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=35.7575757575758, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=37.2781065088757, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=35.5421686746988, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=32.972972972973, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87081974, Length=188, Percent_Identity=30.3191489361702, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=210, Percent_Identity=30.952380952381, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87081977, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=31.0734463276836, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=32.9479768786127, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54335; Mature: 54335

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPRRTAPYVIVAIASMIACALMALCVLQLLQSRDDAMERARETSRNLGLVAERDIERNF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECHHHCCC
ELYDLSLQAVIHGLQRRDVMDASPSLRRAVLFDHAMTAEFLGSMLVMDAGGNIVLDSGYD
EEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCC
EPRKGNFADRRYFTIHRDNPNVGLYVSDPFVSRLRGGMLSIALTRRISNPDGSFGGIAVI
CCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHCCCHHEEHHHHHCCCCCCCCCCEEEE
AVNLEYFHQLFAGLSLGKHGSISLIGEDGKMVMRQPYDVHTIGRDLSKAATFRRFQTARE
EEEHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GSFSETSSIDGVRRLYYFKHLPKLPLIIMVAEAEQDIYAAWRQRAITIGGLVATFGVAFI
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSLLLGSQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDTSQTGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCCH
AQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALYYAKAT
HHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEEEECC
GRNKVAALQPAE
CCCCEEECCCCC
>Mature Secondary Structure
MHPRRTAPYVIVAIASMIACALMALCVLQLLQSRDDAMERARETSRNLGLVAERDIERNF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECHHHCCC
ELYDLSLQAVIHGLQRRDVMDASPSLRRAVLFDHAMTAEFLGSMLVMDAGGNIVLDSGYD
EEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCC
EPRKGNFADRRYFTIHRDNPNVGLYVSDPFVSRLRGGMLSIALTRRISNPDGSFGGIAVI
CCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHCCCHHEEHHHHHCCCCCCCCCCEEEE
AVNLEYFHQLFAGLSLGKHGSISLIGEDGKMVMRQPYDVHTIGRDLSKAATFRRFQTARE
EEEHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GSFSETSSIDGVRRLYYFKHLPKLPLIIMVAEAEQDIYAAWRQRAITIGGLVATFGVAFI
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSLLLGSQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDTSQTGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCCH
AQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALYYAKAT
HHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEEEECC
GRNKVAALQPAE
CCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]