| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is bcsB [H]
Identifier: 116689401
GI number: 116689401
Start: 1517999
End: 1520344
Strand: Direct
Name: bcsB [H]
Synonym: Bcen2424_1379
Alternate gene names: 116689401
Gene position: 1517999-1520344 (Clockwise)
Preceding gene: 116689399
Following gene: 116689402
Centisome position: 43.57
GC content: 72.59
Gene sequence:
>2346_bases ATGAAGCCGGCCGTGTCGCTGTTCGTTCTGGCTGCCGCGATGACCGGCGCTTTCCACACGGCCGCGCTGTCGGCCGCACC GCTGCCGGCGGTGCCGGCCGCCGCTTCGACGGCCGCCGCCGATCACGCAGCGGTGCCGGATGCCGCGCCAGCGGCGGTGC TCGTGACCGCTCCGGCCACGCCGGCGGCGGCCAGCGCGCCGACCGCCGGCCTGCCGGCGACGACCGTACGCATGCCGTTC GCGTCGCTCGGCGCGTTCGATCCACTGCGCCTGCGCGGCGCCGACGACGCACGCACGATCAACGCCGGCGTGCGGCTCGA CCGCGTGATCACGGGCGCGCGCTTGCGCCTGACCTACGCGTATTCGCCGTCGCTGGTCTTTCCGCTGTCGCACCTGAAGG TGTCGGTGAACGGCGAGGTGATCGCGACCGTCCCGTTCGATGCCGCGCGTGCGGGCCGCACGGTGACGCAAGAGATCCCG ATCGATCCGCGCTACTTTTCGGATTTCAACCAGATCGGCCTGCGCCTGATCGCGCATTACACGCTCGACCACTGCGAGGA CCCGACGAATTCGGCGTTGTGGGCCGACGTGAGCCCGACGAGCGAACTGATCCTCGACGAATCGCCGGTGCGCCTGCCGA ACGATCTCGCGCTGCTGCCCGCGCCGTTCTTCGACCGGCGCGACAACGGCCGCCTGCGGCTGCCGTTCGTGCTGCCCGCC ACGCCCGATTCGGCCACCCTGCGCAGCGCGGGCGTGCTCGCGTCGTGGTTCGGCGCGCTGGCCGACTACCGGCATGCGCG GTTCCCGGTATCGACCGCGCTGCCGGCCGACGACCAGGCCGTCGTGGTCGGCACGGCCGCGACGCTGCCGGCCGGTCTCG CGCTGCCGCCAATCAATGGCCCGCTGCTCGCGGTCGCGGACAACCCGTCCGCGCCGGGCCGCAAGCTGCTGGTCGTCACG GGCCGCACGGCGGCCGAGGTCGACGACGCGGTCGCGACGCTCGTGCTCGGCCGCGCGGCGCTGTCGGGGCAGGCGGCGAC GGTCGCGCACGTCGATCTGGGCGCGCCGCGCAAGCCGTACGACGCGCCGCGCTGGCTGCCGGTGAACCGGCCGATCGCGT TCCGCGAACTCGTGAACGATCCGCGTCAGCTGGAGGTGCGCGGCACGACGCCCGACGCGATCCGGCTGAACCTGCGCGTG CCGGCCGATCTGCATTCGTGGAACGGCGCGGGCGTGCCGATCACGCTGCGCTACCGCTACACGGCGCCGACCGTGCAGGA CAATTCGACGCTCGCGGTCGAGATCAACGATCAGCTCGTGAAGTCGTACCGGCTCGGGCCGGCCCATGCCGAAGATGCGC ACGGCCGCATGCAGCTGCCGCTGCTGGCGGTGCCGGAAGGGCGCGTGACGAGCGACGTCGACATTCCCGCGTTCCGCGTC GGCAGCGGCAACCAGCTGCAGTTCCGCTTCACGCTCGATTCGCAGAAGACGGGCCTGTGTTCGAGCACGGCCACCGAGCC GCAACGCGCGGCGATCGATCCTGACTCGACGATCGACTTCTCGCACTTCGTCCATTACGCGCAATTGCCGAACCTCGCGT TCTTCGCGAACAGCGGCTTCCCGTTCACGCGCTTCGCCGACCTGTCGCAGACGGCCGTCGTGCTGCCCGACCGGCCGTCG CCGCAGGAACTCGAGGCCTACCTGACGATGCTCGGCCACATGGGTGAATGGACCGGTTTCCCGGCGCTGCGCGTGCAGGT GGCGCGGCCCGGCGACGTCGCCGCGCTGTCGGGGCACAAGGACCTGCTCGTGATCGACGGCTCGCCCGCATCGCCGCTGC TCGCGCAGTGGCGCGCGGCGCTGCCGCTCGCGATCGGCGAGCAGGGCGGGGCCGGCGGCGCGGGCGCGACGCGCGTCGCT TTCACGGTGAAGGAGCGCTGGCGCAACGGCGTGGGCCTCGCCGACGGCGGCGCGCATATCGAACAGACGGGCCCGCTCGC GGCGCTCGCCGGGTTCGAGCTGCCCGGTAGCCGCGGCCGCAGCGTCGTCGCGCTGACGGCGACCGACCAGCCGCGCCTCG GCGATCTGCTCGACGTGTTCGAGAGCGGCGGGCTCGTGTCGCAGTTGCAGGGCGACCTCGCGCTGGTCCGGCCGGGGCAG GTCGACAGCCTGCGGGTCGGCGAGCCTTACGTGGTCGGCTTCGTGCCGTGGTATGCGCGCGTGTGGACGGAGGCGGCGCG GCATCCGGTGCTGCTCGGCGCGGTCGGCGTCGTCGCAGGGCTGCTGCTCGCGCTCGGCGTGTTCAGCGTGCTGCAGCGAA TCGCCGCGCGTCGCCGGGGGATGTAA
Upstream 100 bases:
>100_bases GGGAAGCAGAGGGGATGTGCACTCACGGGCATAGCTGCTTTGCGCGCGTCGGTTTCGACGCGCAGGATGACCGGACGATC GTGACGAAGCGGAGCGGCGC
Downstream 100 bases:
>100_bases CGGATGGCGCGGGCAATGACGAAGCGACGGGCAACGCAGCCGGCGCGGCGTGTCGGCGCGACGCTCGCGCTGGCGGTCGC GGTGACGTGCGCGGCGGCCG
Product: cellulose synthase regulator protein
Products: NA
Alternate protein names: Cellulose synthase regulatory subunit [H]
Number of amino acids: Translated: 781; Mature: 781
Protein sequence:
>781_residues MKPAVSLFVLAAAMTGAFHTAALSAAPLPAVPAAASTAAADHAAVPDAAPAAVLVTAPATPAAASAPTAGLPATTVRMPF ASLGAFDPLRLRGADDARTINAGVRLDRVITGARLRLTYAYSPSLVFPLSHLKVSVNGEVIATVPFDAARAGRTVTQEIP IDPRYFSDFNQIGLRLIAHYTLDHCEDPTNSALWADVSPTSELILDESPVRLPNDLALLPAPFFDRRDNGRLRLPFVLPA TPDSATLRSAGVLASWFGALADYRHARFPVSTALPADDQAVVVGTAATLPAGLALPPINGPLLAVADNPSAPGRKLLVVT GRTAAEVDDAVATLVLGRAALSGQAATVAHVDLGAPRKPYDAPRWLPVNRPIAFRELVNDPRQLEVRGTTPDAIRLNLRV PADLHSWNGAGVPITLRYRYTAPTVQDNSTLAVEINDQLVKSYRLGPAHAEDAHGRMQLPLLAVPEGRVTSDVDIPAFRV GSGNQLQFRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVLPDRPS PQELEAYLTMLGHMGEWTGFPALRVQVARPGDVAALSGHKDLLVIDGSPASPLLAQWRAALPLAIGEQGGAGGAGATRVA FTVKERWRNGVGLADGGAHIEQTGPLAALAGFELPGSRGRSVVALTATDQPRLGDLLDVFESGGLVSQLQGDLALVRPGQ VDSLRVGEPYVVGFVPWYARVWTEAARHPVLLGAVGVVAGLLLALGVFSVLQRIAARRRGM
Sequences:
>Translated_781_residues MKPAVSLFVLAAAMTGAFHTAALSAAPLPAVPAAASTAAADHAAVPDAAPAAVLVTAPATPAAASAPTAGLPATTVRMPF ASLGAFDPLRLRGADDARTINAGVRLDRVITGARLRLTYAYSPSLVFPLSHLKVSVNGEVIATVPFDAARAGRTVTQEIP IDPRYFSDFNQIGLRLIAHYTLDHCEDPTNSALWADVSPTSELILDESPVRLPNDLALLPAPFFDRRDNGRLRLPFVLPA TPDSATLRSAGVLASWFGALADYRHARFPVSTALPADDQAVVVGTAATLPAGLALPPINGPLLAVADNPSAPGRKLLVVT GRTAAEVDDAVATLVLGRAALSGQAATVAHVDLGAPRKPYDAPRWLPVNRPIAFRELVNDPRQLEVRGTTPDAIRLNLRV PADLHSWNGAGVPITLRYRYTAPTVQDNSTLAVEINDQLVKSYRLGPAHAEDAHGRMQLPLLAVPEGRVTSDVDIPAFRV GSGNQLQFRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVLPDRPS PQELEAYLTMLGHMGEWTGFPALRVQVARPGDVAALSGHKDLLVIDGSPASPLLAQWRAALPLAIGEQGGAGGAGATRVA FTVKERWRNGVGLADGGAHIEQTGPLAALAGFELPGSRGRSVVALTATDQPRLGDLLDVFESGGLVSQLQGDLALVRPGQ VDSLRVGEPYVVGFVPWYARVWTEAARHPVLLGAVGVVAGLLLALGVFSVLQRIAARRRGM >Mature_781_residues MKPAVSLFVLAAAMTGAFHTAALSAAPLPAVPAAASTAAADHAAVPDAAPAAVLVTAPATPAAASAPTAGLPATTVRMPF ASLGAFDPLRLRGADDARTINAGVRLDRVITGARLRLTYAYSPSLVFPLSHLKVSVNGEVIATVPFDAARAGRTVTQEIP IDPRYFSDFNQIGLRLIAHYTLDHCEDPTNSALWADVSPTSELILDESPVRLPNDLALLPAPFFDRRDNGRLRLPFVLPA TPDSATLRSAGVLASWFGALADYRHARFPVSTALPADDQAVVVGTAATLPAGLALPPINGPLLAVADNPSAPGRKLLVVT GRTAAEVDDAVATLVLGRAALSGQAATVAHVDLGAPRKPYDAPRWLPVNRPIAFRELVNDPRQLEVRGTTPDAIRLNLRV PADLHSWNGAGVPITLRYRYTAPTVQDNSTLAVEINDQLVKSYRLGPAHAEDAHGRMQLPLLAVPEGRVTSDVDIPAFRV GSGNQLQFRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGFPFTRFADLSQTAVVLPDRPS PQELEAYLTMLGHMGEWTGFPALRVQVARPGDVAALSGHKDLLVIDGSPASPLLAQWRAALPLAIGEQGGAGGAGATRVA FTVKERWRNGVGLADGGAHIEQTGPLAALAGFELPGSRGRSVVALTATDQPRLGDLLDVFESGGLVSQLQGDLALVRPGQ VDSLRVGEPYVVGFVPWYARVWTEAARHPVLLGAVGVVAGLLLALGVFSVLQRIAARRRGM
Specific function: Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass type I membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AcsB/BcsB family [H]
Homologues:
Organism=Escherichia coli, GI1789952, Length=705, Percent_Identity=34.468085106383, Blast_Score=394, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003920 - InterPro: IPR018513 [H]
Pfam domain/function: PF03170 BcsB [H]
EC number: NA
Molecular weight: Translated: 82265; Mature: 82265
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAVSLFVLAAAMTGAFHTAALSAAPLPAVPAAASTAAADHAAVPDAAPAAVLVTAPAT CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCC PAAASAPTAGLPATTVRMPFASLGAFDPLRLRGADDARTINAGVRLDRVITGARLRLTYA CCCCCCCCCCCCCCEEECCHHHHCCCCCEEECCCCCCEEEECCCEEEEEECCCEEEEEEE YSPSLVFPLSHLKVSVNGEVIATVPFDAARAGRTVTQEIPIDPRYFSDFNQIGLRLIAHY ECCCEEEEEEHEEEEECCEEEEEECCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHH TLDHCEDPTNSALWADVSPTSELILDESPVRLPNDLALLPAPFFDRRDNGRLRLPFVLPA HHHHCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEC TPDSATLRSAGVLASWFGALADYRHARFPVSTALPADDQAVVVGTAATLPAGLALPPING CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEHHHCCCCCCCCCCCC PLLAVADNPSAPGRKLLVVTGRTAAEVDDAVATLVLGRAALSGQAATVAHVDLGAPRKPY CEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC DAPRWLPVNRPIAFRELVNDPRQLEVRGTTPDAIRLNLRVPADLHSWNGAGVPITLRYRY CCCCEEECCCCCHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE TAPTVQDNSTLAVEINDQLVKSYRLGPAHAEDAHGRMQLPLLAVPEGRVTSDVDIPAFRV ECCCCCCCCEEEEEECHHHHHHHCCCCCCCCCCCCEEECEEEECCCCCCCCCCCCCEEEE GSGNQLQFRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGF CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC PFTRFADLSQTAVVLPDRPSPQELEAYLTMLGHMGEWTGFPALRVQVARPGDVAALSGHK CCCEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEECCCC DLLVIDGSPASPLLAQWRAALPLAIGEQGGAGGAGATRVAFTVKERWRNGVGLADGGAHI EEEEECCCCCCHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCC EQTGPLAALAGFELPGSRGRSVVALTATDQPRLGDLLDVFESGGLVSQLQGDLALVRPGQ CCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHCCCEEEECCCC VDSLRVGEPYVVGFVPWYARVWTEAARHPVLLGAVGVVAGLLLALGVFSVLQRIAARRRG CCEEECCCCEEEEEHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC M C >Mature Secondary Structure MKPAVSLFVLAAAMTGAFHTAALSAAPLPAVPAAASTAAADHAAVPDAAPAAVLVTAPAT CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCC PAAASAPTAGLPATTVRMPFASLGAFDPLRLRGADDARTINAGVRLDRVITGARLRLTYA CCCCCCCCCCCCCCEEECCHHHHCCCCCEEECCCCCCEEEECCCEEEEEECCCEEEEEEE YSPSLVFPLSHLKVSVNGEVIATVPFDAARAGRTVTQEIPIDPRYFSDFNQIGLRLIAHY ECCCEEEEEEHEEEEECCEEEEEECCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHH TLDHCEDPTNSALWADVSPTSELILDESPVRLPNDLALLPAPFFDRRDNGRLRLPFVLPA HHHHCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEC TPDSATLRSAGVLASWFGALADYRHARFPVSTALPADDQAVVVGTAATLPAGLALPPING CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEHHHCCCCCCCCCCCC PLLAVADNPSAPGRKLLVVTGRTAAEVDDAVATLVLGRAALSGQAATVAHVDLGAPRKPY CEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC DAPRWLPVNRPIAFRELVNDPRQLEVRGTTPDAIRLNLRVPADLHSWNGAGVPITLRYRY CCCCEEECCCCCHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE TAPTVQDNSTLAVEINDQLVKSYRLGPAHAEDAHGRMQLPLLAVPEGRVTSDVDIPAFRV ECCCCCCCCEEEEEECHHHHHHHCCCCCCCCCCCCEEECEEEECCCCCCCCCCCCCEEEE GSGNQLQFRFTLDSQKTGLCSSTATEPQRAAIDPDSTIDFSHFVHYAQLPNLAFFANSGF CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC PFTRFADLSQTAVVLPDRPSPQELEAYLTMLGHMGEWTGFPALRVQVARPGDVAALSGHK CCCEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEECCCC DLLVIDGSPASPLLAQWRAALPLAIGEQGGAGGAGATRVAFTVKERWRNGVGLADGGAHI EEEEECCCCCCHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCC EQTGPLAALAGFELPGSRGRSVVALTATDQPRLGDLLDVFESGGLVSQLQGDLALVRPGQ CCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHCCCEEEECCCC VDSLRVGEPYVVGFVPWYARVWTEAARHPVLLGAVGVVAGLLLALGVFSVLQRIAARRRG CCEEECCCCEEEEEHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC M C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]