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The map label for this gene is ynbD [H]

Identifier: 116689398

GI number: 116689398

Start: 1514584

End: 1515999

Strand: Direct

Name: ynbD [H]

Synonym: Bcen2424_1376

Alternate gene names: 116689398

Gene position: 1514584-1515999 (Clockwise)

Preceding gene: 116689397

Following gene: 116689399

Centisome position: 43.47

GC content: 73.09

Gene sequence:

>1416_bases
ATGAGCGTGTTCGGCGGCGGCGCGGGCGCGGAGGCGAGTGACGGGCTGGCCGAACCGGCGGCCGGCGCGCGCGACGCGTC
GTTCGTGCTGCGCCTGGGCTGGCTCGCGGCGATGGGCGCCGTGTTCTTCTCGACGTACGGCTTCGCGAACTGGCTCGCCG
CGCGCCGCGCCGCGGTGCCGACCTTCGCGTTCGGCTGGGAGCATGCGATCCCGTTCGTGCCGTGGACGATCGTGCCGTAC
TGGTCGATCGACCTGCTGTATGCGTTGTCGTTCTTCTTCTGGACGCGCCGCGACGATCTGCTCGATCACGTGAAGCGGCT
GCTGACCGTGCAGCTGGTGTCGGTTGCGTGCTTCATCGCGTGGCCGCTGCGCTTCGGCTTCGAGCGGCCCGACGCGGGCG
GCATGGCCGGTGCGCTGTTCACGCTGCTGATGGGTTTCGACAAGCCGTTCAACCAGGCGCCGTCGCTGCATATCGGCTTG
CTGGTCGTGCTGTGGGCCGTCTATGCGAAGCACCTGCGCGGCACGGTCGCGCGCGTCGTGCTGCATCTGTGGTTCGCGGC
GATCGGTGTGTCGGTGCTGACGACTTACCAGCATCACACGATCGACGTGCCGACCGGGGCGGCCGTCGGCTGTCTCGCGC
TGTTCCTGTTTCCGCTGCGCGATGCCGCGGGCCGGCTGCCGGGCGCCGATGCGTCGCCGTCCGCGGCCGGTCGCGCGCTC
GCGCGCCGCTATGCGTTCGGCGTCGCGCTGGTCGCACTCGTGGCGCTGGCGTGCGTGCCGCGCGCGCCGGGCTGGGCGCT
GGCGGCTGGGTGGGTCGCGCTGGCGCTCGCCTGCGTTGCGTGGGCCTACCGGCGCGGCGCGCCCGGCGCGTTCCAGAAGG
ATGCGCACGGGCGGTTTCCGGTTTTCGTCGGCGGGCTGCTCGCGCCGACGATCGTCGGCGCATTCGTCAATTCGCGGCTG
TGGACGCGCCGGCAGCCCGCGCCGGTGCGGATCGACGAGCGCGTGTCGATCGGCCGGACGCCGACGACGCGCGACATCCG
GCGCCACGGCTTCACCGCGCTGGTCGACCTGACCGCCGAGATGCCGCGCTGGGCGGCGGCCGACGCATCGCTCGCGTATG
CGTCGGTGCCTCAGCTCGATCTCGTCGCACCGACGGCGGCGCAGCTCGCGCAGGCCGTCGAGGCGCTCGAACGCCTGCAC
GGCGAAGGGCGCGACGTGCTGGTCTGCTGTGCGCTCGGCTACGGGCGCAGCGTGCTGTGCGCGGCCGCGTGGCTCGCCGC
GCGGCGCGGGTTGGCCGATGCGCGCGAAGCGCTGGCCGCGGTGCGCGCGGTCCGGCCACGCGCGGTATGGTCGGATGAAA
GCGTGGCCGTGCTGCAGCAGTGGATCGATCGCCAGCGCGGCGCGGGGCAGGGGTGA

Upstream 100 bases:

>100_bases
TGGACGAACTCGTCGCGCGGGCGGGGTTCCGCAAGCTCGACCAGCGGATCGACGAGATGGGCATCTTCACGGTCAGCCTC
GCGCAGCGGGTCGATGCGTC

Downstream 100 bases:

>100_bases
TGCGCGATCCGTCCGCTCCGTTCAGGATTGCCGCCGCACGCGGCGCGCTCGATGCGGGCGCATGGGCGCTCGCGGCAGCG
CTGGTCGCGGCCGGCGCGGG

Product: dual specificity protein phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSVFGGGAGAEASDGLAEPAAGARDASFVLRLGWLAAMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPY
WSIDLLYALSFFFWTRRDDLLDHVKRLLTVQLVSVACFIAWPLRFGFERPDAGGMAGALFTLLMGFDKPFNQAPSLHIGL
LVVLWAVYAKHLRGTVARVVLHLWFAAIGVSVLTTYQHHTIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPSAAGRAL
ARRYAFGVALVALVALACVPRAPGWALAAGWVALALACVAWAYRRGAPGAFQKDAHGRFPVFVGGLLAPTIVGAFVNSRL
WTRRQPAPVRIDERVSIGRTPTTRDIRRHGFTALVDLTAEMPRWAAADASLAYASVPQLDLVAPTAAQLAQAVEALERLH
GEGRDVLVCCALGYGRSVLCAAAWLAARRGLADAREALAAVRAVRPRAVWSDESVAVLQQWIDRQRGAGQG

Sequences:

>Translated_471_residues
MSVFGGGAGAEASDGLAEPAAGARDASFVLRLGWLAAMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPY
WSIDLLYALSFFFWTRRDDLLDHVKRLLTVQLVSVACFIAWPLRFGFERPDAGGMAGALFTLLMGFDKPFNQAPSLHIGL
LVVLWAVYAKHLRGTVARVVLHLWFAAIGVSVLTTYQHHTIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPSAAGRAL
ARRYAFGVALVALVALACVPRAPGWALAAGWVALALACVAWAYRRGAPGAFQKDAHGRFPVFVGGLLAPTIVGAFVNSRL
WTRRQPAPVRIDERVSIGRTPTTRDIRRHGFTALVDLTAEMPRWAAADASLAYASVPQLDLVAPTAAQLAQAVEALERLH
GEGRDVLVCCALGYGRSVLCAAAWLAARRGLADAREALAAVRAVRPRAVWSDESVAVLQQWIDRQRGAGQG
>Mature_470_residues
SVFGGGAGAEASDGLAEPAAGARDASFVLRLGWLAAMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPYW
SIDLLYALSFFFWTRRDDLLDHVKRLLTVQLVSVACFIAWPLRFGFERPDAGGMAGALFTLLMGFDKPFNQAPSLHIGLL
VVLWAVYAKHLRGTVARVVLHLWFAAIGVSVLTTYQHHTIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPSAAGRALA
RRYAFGVALVALVALACVPRAPGWALAAGWVALALACVAWAYRRGAPGAFQKDAHGRFPVFVGGLLAPTIVGAFVNSRLW
TRRQPAPVRIDERVSIGRTPTTRDIRRHGFTALVDLTAEMPRWAAADASLAYASVPQLDLVAPTAAQLAQAVEALERLHG
EGRDVLVCCALGYGRSVLCAAAWLAARRGLADAREALAAVRAVRPRAVWSDESVAVLQQWIDRQRGAGQG

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=441, Percent_Identity=37.8684807256236, Blast_Score=236, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 50515; Mature: 50384

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVFGGGAGAEASDGLAEPAAGARDASFVLRLGWLAAMGAVFFSTYGFANWLAARRAAVP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC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HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]