| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689291
Identifier: 116689291
GI number: 116689291
Start: 1400013
End: 1401659
Strand: Direct
Name: 116689291
Synonym: Bcen2424_1269
Alternate gene names: NA
Gene position: 1400013-1401659 (Clockwise)
Preceding gene: 116689290
Following gene: 116689292
Centisome position: 40.19
GC content: 68.67
Gene sequence:
>1647_bases ATGACCGGATGGAATCACGCGCGGCAGGCGCGCGATGCACGCCTCGCGGCCGGCGCGGCATACGCGCAGGGCAAGCGGGT CGATGCGCGCGACACCGTCGCGTTGCTCGAAGCGGTGCTGCGGCCCGGCGATCGCGTGTGCCTCGAAGGCGACAACCAGA AGCAGGCCGATCTGCTCGCCACCGCGCTCGCCGACGTCGACAGCGCGAAGATCCACGACCTGCACATGGTGCAGTCGGGC GTCGTGCTGCCCGAGCATCTCGACGTGTTCGAGCGCGGCATCGCGAAGCGGCTCGACTTCGCGTATTCGGGCCCGCAGTC GCAGCGCATCGCGAAGCTGCTGTTCGGCGGCAAGATCGCGCTCGGCGCGGTGCATACCTATCTCGAGCTGTTCGCCCGCT ACTTCATCGACCTCACGCCGCAGGTCGCGCTGATCGCGGCCGTGAGCGCCGATCGCGACGGCAACCTGTACACCGGCCCG AACACCGAGGACACGCCGACCGTCGTCGAAGCGACCGCCTTCAAGGACGGCATCGTGATCGCGCAGGTCGACCGCATCGT CGACAAGGTGCCGCGCGTCGACATTCCGGGCGATCGCGTGCATTTCGTCGTCGAGGCCGGCCGGCCGTTCTACGTCGAGC CGCTGTTCACGCGCGATCCGGCCGCGATCACCGAAACGCAGATCCTCACCGCGATGCTCGCGATCAAGGGCATCTACGAA CCGTACGGGATCAAGCGTCTGAACCACGGAATCGGCTTCAACACGGCCGCGATCGAGCTGCTGCTGCCGACCTACGGCGC GAAGCTCGGGCTGAAGGGCAAGGTCTGCACGCACTGGGCGCTCAATCCGCACCCGACGCTGATCCCCGCGATCGAATTGG GGTGGGTCGAGCAGGTCCACTGCTTCGGCTCCGAGGTCGGGATGGACGACTACATCCGCGCGCGCTCCGACGTGTGGTTC ACGGGCCCCGACGGGTCGCTGCGCTCGAACCGGGCGTTCTGCCAGACGGCCGGCCTCTATGCATGCGACATGTTCATCGG CTCGACGCTGCAGATCGACCTGTCCGGCCATTCGTCGACGGTCACGGCCGAGCGGATCGCCGGCTTCGGCGGCGCGCCGA ACATGGGCAGCGACGCGCGCGGCCGGCGCCATCCGAGCGAGCCGTGGCTGAAGGCCGGCGCGGAAGCCGACCCCGACACG CCGGCGGCGCTGCGGCGCGGCCGCAAGCTGGTCGTGCAGATCGGCGAGACGTTCGGCGACAAGAACGTGCCGATGTTCGT CGAGAAGCTCGACGCGCTGAAGCTCGCCGACAAGCTGCAGCTCGACCTCGCGCCGATCATGGTCTACGGCGACGACGTCA CGCACATCGTCACCGAGGAAGGGATCGCGAACCTGCTGATGTGCCGCGACAAGGACGAACGCGAGCACGCGATTCGCGGC GTCGCCGGCTATACCGACGTCGGCCGCGGCCGCGACAAGAAGCTGGTCGAGCGGCTGCGCGAACGCGGCGTGATCCGTCG CCCGGAGGATCTCGGTATCGATCCGCTCGACGCCGACCGCCGCTGGCTCGCCGCGCGGTCGATCAAGGATCTGGTGCACT GGTCGGGCGGGCTCTATGCGCCGCCGGCCCGGTTCCGCAACTGGTGA
Upstream 100 bases:
>100_bases ATCCATCGCCGCGTCCTCTGAGTCGCATTCTGCAACATCATCAATCGGCGGCGGCGCCAGGCTTAGAATGCCGCTGAACC CTCGAAGCGGAGAACTGTTC
Downstream 100 bases:
>100_bases GGAAGAGGGCATGGAACAGTTGAACTATCGCTTCACCGCGCGCGAACGCGCGAAGGGCGAGCAGGCCGCGGCGCTCGTCG GCGTGGTCGCGTCCGGCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha Subunit Of Malonate Decarboxylase; Malonate Decarboxylase Subunit Alpha; Malonate Decarboxylase Alpha-Subunit; Subunit Alpha Of Malonate Decarboxylase
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MTGWNHARQARDARLAAGAAYAQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSG VVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGP NTEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIELGWVEQVHCFGSEVGMDDYIRARSDVWF TGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLSGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAEADPDT PAALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG VAGYTDVGRGRDKKLVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW
Sequences:
>Translated_548_residues MTGWNHARQARDARLAAGAAYAQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSG VVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGP NTEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIELGWVEQVHCFGSEVGMDDYIRARSDVWF TGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLSGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAEADPDT PAALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG VAGYTDVGRGRDKKLVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW >Mature_547_residues TGWNHARQARDARLAAGAAYAQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLATALADVDSAKIHDLHMVQSGV VLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIALGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPN TEDTPTVVEATAFKDGIVIAQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYEP YGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIELGWVEQVHCFGSEVGMDDYIRARSDVWFT GPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLSGHSSTVTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAEADPDTP AALRRGRKLVVQIGETFGDKNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRGV AGYTDVGRGRDKKLVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYAPPARFRNW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60119; Mature: 59988
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGWNHARQARDARLAAGAAYAQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLA CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH TALADVDSAKIHDLHMVQSGVVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIA HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH LGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPNTEDTPTVVEATAFKDGIVI HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCEEE AQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE EHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECEECCCCCCHHHHHHHHHHHHHHHHCCC PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIELGWVEQVH CCCHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHH CFGSEVGMDDYIRARSDVWFTGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLSGHSST HHCCCCCCHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCEEEHHHHCCEEEEEECCCCCC VTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAEADPDTPAALRRGRKLVVQIGETFGD EEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEHHHCCC KNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHC VAGYTDVGRGRDKKLVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYA CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PPARFRNW CCHHHCCC >Mature Secondary Structure TGWNHARQARDARLAAGAAYAQGKRVDARDTVALLEAVLRPGDRVCLEGDNQKQADLLA CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH TALADVDSAKIHDLHMVQSGVVLPEHLDVFERGIAKRLDFAYSGPQSQRIAKLLFGGKIA HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH LGAVHTYLELFARYFIDLTPQVALIAAVSADRDGNLYTGPNTEDTPTVVEATAFKDGIVI HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCEEE AQVDRIVDKVPRVDIPGDRVHFVVEAGRPFYVEPLFTRDPAAITETQILTAMLAIKGIYE EHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECEECCCCCCHHHHHHHHHHHHHHHHCCC PYGIKRLNHGIGFNTAAIELLLPTYGAKLGLKGKVCTHWALNPHPTLIPAIELGWVEQVH CCCHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHH CFGSEVGMDDYIRARSDVWFTGPDGSLRSNRAFCQTAGLYACDMFIGSTLQIDLSGHSST HHCCCCCCHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCEEEHHHHCCEEEEEECCCCCC VTAERIAGFGGAPNMGSDARGRRHPSEPWLKAGAEADPDTPAALRRGRKLVVQIGETFGD EEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEEHHHCCC KNVPMFVEKLDALKLADKLQLDLAPIMVYGDDVTHIVTEEGIANLLMCRDKDEREHAIRG CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHC VAGYTDVGRGRDKKLVERLRERGVIRRPEDLGIDPLDADRRWLAARSIKDLVHWSGGLYA CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PPARFRNW CCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA