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The map label for this gene is ydcM [C]

Identifier: 116689214

GI number: 116689214

Start: 1309718

End: 1310779

Strand: Direct

Name: ydcM [C]

Synonym: Bcen2424_1192

Alternate gene names: 116689214

Gene position: 1309718-1310779 (Clockwise)

Preceding gene: 116689212

Following gene: 116689215

Centisome position: 37.59

GC content: 60.45

Gene sequence:

>1062_bases
ATGGCCGGCATGATCCTTGTCTATCGCTACCGGGTGAAATCGCTCAACGGACTGCTCAACAAGCAGAGCCGTGCGGTGAA
CTACGTCTGGAACTTCTGCAACGACACGCAGAAGCACGCGCTCAAGTGGGGCAAGAAGTGGCCGACGGGATTCGACCTGA
ACGTGCTGACGACTGGCAGCAGCAAGGAACTCGGTATTCACTCCGGCACGGTCAACGCGACGTGCGAGCAATACGCGAAG
TCGCGCAGCCAGCACCGTCGGCCCTACCTGCGCTATCGCGGCAGGAAATCGCTGGGCTGGTTGCCGCTGAAGGGGCGTGA
CCTGAAGCGCGAAGGCGACGCGTTCCGTTTCGCGGGCAACACCTTTCGCGTGTTCAACAGCCGACCGCTTCCCGAAGGCA
AGATCAAGGACGGGACCAACTTCGCGCAGGATGCACGCGGCAACTGGTTTCTCAACATCGTGATCGAGATGCCCGATGTG
CAGGCCCGCCCGATCCGTTCCGGCGTCGGCATCGATCTCGGCCTGAAAGACTTCACCACACTTTCGACCGGCGAGAAGCT
GCCCAATGACCAGTTTGGCCGGCGCGCGGCTGAAAGGTTGGCGAAGGCGCAGCGTGCGCACAAGCACAAGCGGCATATCG
CGAAGCTGCACGCCAAGGTCGCGAATGCGCGTGCCGATTTCCAACACAAGCTCGCGCTCGATCTGGTGCGGCGCTTCGAT
TACATCGCGGTTGGCAACGTATCTGCCGTCAAACTTGCCAGAACCAGGATGGCAAAGAGCGTCTACGACGCATCCTGGTC
GTCCTTCCGAAACAAGCTCCGCTACAAGGCGATCGCGCACGGGGCCACGTTCGAGGAAGTCGACGAAAGCGGTTCGACCC
AGTCCTGTTCGGCGTGCGGATCGAAAGACAGCACGACGCGGCCGAAAGGTATCGCGGGACTGAGAATAAGAGAGTGGGTC
TGCAGTGACTGTGGTGTCTTGCATGATCGAGATACCAACGCTGCGCTGAACATTCTCCGATGCGGACGTGCATCGCCAGG
TGTGGGAACCCTCTCCCTTTAG

Upstream 100 bases:

>100_bases
GCGTACCGGCGTTCATTCATCAGTTGCTCCGAGAAACCCCGTCCTTCAGGACGGGGAGGAAAGGAGCGCCGCTGTTTGAC
AGCGGCATTCCACCGTTAAA

Downstream 100 bases:

>100_bases
GGAGAGGAGGACGTCAATCACACGGATGCGGGAATGACGCGCCGACCGGCTATCATGTGCGCGATGCATTTTTCGCCGCT
ACGTGTGAATAACGCGGCGG

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MAGMILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWGKKWPTGFDLNVLTTGSSKELGIHSGTVNATCEQYAK
SRSQHRRPYLRYRGRKSLGWLPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDV
QARPIRSGVGIDLGLKDFTTLSTGEKLPNDQFGRRAAERLAKAQRAHKHKRHIAKLHAKVANARADFQHKLALDLVRRFD
YIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACGSKDSTTRPKGIAGLRIREWV
CSDCGVLHDRDTNAALNILRCGRASPGVGTLSL

Sequences:

>Translated_353_residues
MAGMILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWGKKWPTGFDLNVLTTGSSKELGIHSGTVNATCEQYAK
SRSQHRRPYLRYRGRKSLGWLPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDV
QARPIRSGVGIDLGLKDFTTLSTGEKLPNDQFGRRAAERLAKAQRAHKHKRHIAKLHAKVANARADFQHKLALDLVRRFD
YIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACGSKDSTTRPKGIAGLRIREWV
CSDCGVLHDRDTNAALNILRCGRASPGVGTLSL
>Mature_352_residues
AGMILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWGKKWPTGFDLNVLTTGSSKELGIHSGTVNATCEQYAKS
RSQHRRPYLRYRGRKSLGWLPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQ
ARPIRSGVGIDLGLKDFTTLSTGEKLPNDQFGRRAAERLAKAQRAHKHKRHIAKLHAKVANARADFQHKLALDLVRRFDY
IAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACGSKDSTTRPKGIAGLRIREWVC
SDCGVLHDRDTNAALNILRCGRASPGVGTLSL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=259, Percent_Identity=26.2548262548263, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 39510; Mature: 39378

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGMILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWGKKWPTGFDLNVLTTGS
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCC
SKELGIHSGTVNATCEQYAKSRSQHRRPYLRYRGRKSLGWLPLKGRDLKREGDAFRFAGN
CCCCCEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEECCC
TFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFTT
EEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEECCHHHHC
LSTGEKLPNDQFGRRAAERLAKAQRAHKHKRHIAKLHAKVANARADFQHKLALDLVRRFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACG
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHCC
SKDSTTRPKGIAGLRIREWVCSDCGVLHDRDTNAALNILRCGRASPGVGTLSL
CCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGMILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWGKKWPTGFDLNVLTTGS
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEECCC
SKELGIHSGTVNATCEQYAKSRSQHRRPYLRYRGRKSLGWLPLKGRDLKREGDAFRFAGN
CCCCCEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEECCC
TFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFTT
EEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEECCHHHHC
LSTGEKLPNDQFGRRAAERLAKAQRAHKHKRHIAKLHAKVANARADFQHKLALDLVRRFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSACG
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHCC
SKDSTTRPKGIAGLRIREWVCSDCGVLHDRDTNAALNILRCGRASPGVGTLSL
CCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]