| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689215
Identifier: 116689215
GI number: 116689215
Start: 1310899
End: 1312395
Strand: Direct
Name: 116689215
Synonym: Bcen2424_1193
Alternate gene names: NA
Gene position: 1310899-1312395 (Clockwise)
Preceding gene: 116689214
Following gene: 116689222
Centisome position: 37.63
GC content: 69.67
Gene sequence:
>1497_bases ATGGCATTACCCCTGGACAACGTCAGCATGGCCGTGTTCTGCGACTTCGAGAACGTCGCGCTCGGCGTGCGCGATGCGAA GTACGAGAAATTCGACATCAAGCCCGTGCTGGAGCGCCTGCTGCTGAAAGGCAGCATCGTCGTGAAGAAGGCCTATTGCG ACTGGGATCGCTACAAGGGCTTCAAGGCGTCGATGCACGAGGCGAGCTTCGAGCTGATCGAGATCCCGCACGTGCGCCAG TCGGGCAAGAATTCGGCCGACATCCGGCTCGTCGTCGACGCGCTCGACCTCTGCTACACGAAGTCGCACGTCGATACGTT CGTGATCATCAGCGGCGATTCGGATTTCTCGCCGCTCGTGTCGAAGCTGCGCGAGAACGCGAAGAAGGTGATCGGCGTCG GCGTGAAGAAATCGACGTCGGATCTGCTGGTCGCGAACTGCGACGAATTCATCTTCTACGACGACCTGGTGCGCGAGCAG CAGCGTGCGCTCGCGAAGCGCGAACAGCAGCAGCGCGCGGGCAACGGCGGCGCGAAGCGGCCGGACGAGCCGTCGCGCAA GCACGACATGGAAGCGCGCAAGGCCGAGGCGATCGCGCTGGCGGTCGAGACGTTCGACGCGCTCGCGTCGGAGCGCGACG ACGTCGGCAAGATCTGGGCGTCGGTGCTCAAGAGCGCGATCAAGCGCCGCAAGCCGGATTTCAACGAGTCGTACTACGGG TTCCGCGCGTTCGGCAACCTGCTCGACGAGGCGCAGGCGCGCGGGCTGCTCGAAGTGGGGCGCGACGACAAGTCGGGCGC GTTCGTGTCGCGGGCTCGCCAGTCGGCCGCAGCCGAGCACGTTGCCGCAGGGGGTGAAGGCGGCGCGGCGCACCACGGCG GCCACCACGGTACGCGCGCGGCGGAGGCGGTGCCGGCCGGCCGCGAGGCGCGCCGTCGCGGGCAGCGCGCGCAAGCCGTC GTCCACGAAAGTGTGCAGGTCGAGGCGGATGACGCGGAAGACGCGGAGTTTGCCGAGCTCGCCGATGCGACGCCGGCCGA AACACCCGACGCACCCGACACGCCCGACGTGGCCGAAGCGCATGGCGACGCGAAGGATGGCCGCAAGCGTGCGCGCAAGA GCGCGGCGAAGAAGACCGGCGCGAAGAAAGGCGCCGCCGCGAAGGGCGCCGATCGCTCCGCCGGCGGCAAGCCGGACGCC GCTGCGCAGGGCGATGCGGCGCACGGTGGCGATGCGCACGCGCCCGGCCAGCGTGGGGACGAGTCGCATCGCGACGCAGC GCATGACGAGCGGCACGCGGTGGCGCCAGCCGAACCGGCGCCTCGCGCTTCCGGCGCTCGGGACGAGGCAGTGCAATCGT CGCACGACGTGGCGCCGCTCGACGCGACGCCCGAAGGCGCTGCCGAAGCGCCGGCCGCCGCCAAGCCGAAGAAACCGGCC CGCAAGGCGGCACCGCGTGCGCGCCGTCCGCGCAAGACGACGGCTGCCGCCGAGTAA
Upstream 100 bases:
>100_bases ACACGGATGCGGGAATGACGCGCCGACCGGCTATCATGTGCGCGATGCATTTTTCGCCGCTACGTGTGAATAACGCGGCG GCCCACCGGTTGGAGTACAC
Downstream 100 bases:
>100_bases CCGGGTAACGGTAGCTGGCAGTTGGCGACAGTCTGACGATCGGCCGGGTCTCGTCCGCAACCGGGCGACACCCGCGCCAT CCGGGCCGGCGCAATGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 498; Mature: 497
Protein sequence:
>498_residues MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWDRYKGFKASMHEASFELIEIPHVRQ SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ QRALAKREQQQRAGNGGAKRPDEPSRKHDMEARKAEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYG FRAFGNLLDEAQARGLLEVGRDDKSGAFVSRARQSAAAEHVAAGGEGGAAHHGGHHGTRAAEAVPAGREARRRGQRAQAV VHESVQVEADDAEDAEFAELADATPAETPDAPDTPDVAEAHGDAKDGRKRARKSAAKKTGAKKGAAAKGADRSAGGKPDA AAQGDAAHGGDAHAPGQRGDESHRDAAHDERHAVAPAEPAPRASGARDEAVQSSHDVAPLDATPEGAAEAPAAAKPKKPA RKAAPRARRPRKTTAAAE
Sequences:
>Translated_498_residues MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWDRYKGFKASMHEASFELIEIPHVRQ SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ QRALAKREQQQRAGNGGAKRPDEPSRKHDMEARKAEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYG FRAFGNLLDEAQARGLLEVGRDDKSGAFVSRARQSAAAEHVAAGGEGGAAHHGGHHGTRAAEAVPAGREARRRGQRAQAV VHESVQVEADDAEDAEFAELADATPAETPDAPDTPDVAEAHGDAKDGRKRARKSAAKKTGAKKGAAAKGADRSAGGKPDA AAQGDAAHGGDAHAPGQRGDESHRDAAHDERHAVAPAEPAPRASGARDEAVQSSHDVAPLDATPEGAAEAPAAAKPKKPA RKAAPRARRPRKTTAAAE >Mature_497_residues ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWDRYKGFKASMHEASFELIEIPHVRQS GKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQ RALAKREQQQRAGNGGAKRPDEPSRKHDMEARKAEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF RAFGNLLDEAQARGLLEVGRDDKSGAFVSRARQSAAAEHVAAGGEGGAAHHGGHHGTRAAEAVPAGREARRRGQRAQAVV HESVQVEADDAEDAEFAELADATPAETPDAPDTPDVAEAHGDAKDGRKRARKSAAKKTGAKKGAAAKGADRSAGGKPDAA AQGDAAHGGDAHAPGQRGDESHRDAAHDERHAVAPAEPAPRASGARDEAVQSSHDVAPLDATPEGAAEAPAAAKPKKPAR KAAPRARRPRKTTAAAE
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53162; Mature: 53031
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWDRYKG CCCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHCCHHHHCC FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV CHHHHHHCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRALAKREQQQRAGNGGAKR HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PDEPSRKHDMEARKAEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH FRAFGNLLDEAQARGLLEVGRDDKSGAFVSRARQSAAAEHVAAGGEGGAAHHGGHHGTRA HHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH AEAVPAGREARRRGQRAQAVVHESVQVEADDAEDAEFAELADATPAETPDAPDTPDVAEA HHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH HGDAKDGRKRARKSAAKKTGAKKGAAAKGADRSAGGKPDAAAQGDAAHGGDAHAPGQRGD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESHRDAAHDERHAVAPAEPAPRASGARDEAVQSSHDVAPLDATPEGAAEAPAAAKPKKPA CHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH RKAAPRARRPRKTTAAAE HHCCCCCCCCCCCCCCCC >Mature Secondary Structure ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIKPVLERLLLKGSIVVKKAYCDWDRYKG CCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHCCHHHHCC FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV CHHHHHHCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRALAKREQQQRAGNGGAKR HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PDEPSRKHDMEARKAEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH FRAFGNLLDEAQARGLLEVGRDDKSGAFVSRARQSAAAEHVAAGGEGGAAHHGGHHGTRA HHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH AEAVPAGREARRRGQRAQAVVHESVQVEADDAEDAEFAELADATPAETPDAPDTPDVAEA HHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHH HGDAKDGRKRARKSAAKKTGAKKGAAAKGADRSAGGKPDAAAQGDAAHGGDAHAPGQRGD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESHRDAAHDERHAVAPAEPAPRASGARDEAVQSSHDVAPLDATPEGAAEAPAAAKPKKPA CHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH RKAAPRARRPRKTTAAAE HHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA