| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688863
Identifier: 116688863
GI number: 116688863
Start: 943078
End: 945168
Strand: Direct
Name: 116688863
Synonym: Bcen2424_0840
Alternate gene names: NA
Gene position: 943078-945168 (Clockwise)
Preceding gene: 116688862
Following gene: 116688864
Centisome position: 27.07
GC content: 70.78
Gene sequence:
>2091_bases ATGACGAAACTCGGGTGGGGCAGGCGGGTGGTGTGGGGCGCGGCGCTGGCCGCGGTCGCGATGCTCGGCGCCTGCAACGG CGACGAGTCGGCCGAGCGCAACCGGTTGCCCGGCTTCGTGTCCGGCAGCGTGCGCACGACGGCCTACGACGGCGCGAGCG ACGACCTGCTGACGGCCGGTCTCGGCAAGACCGGCCTCGCGGCGGCGACTGCGCCCGGGTTCGCGAACCCGTCGCGGCCG ACCAGCGCCGAATTGCGCCGTCTTGCCATCTGGTCGAACTATCGCGCGCTCGTCGACATGAGCGCGAATGGCGGCTACGG CCGCTTCTGGGGGCCGAATGTCGACCTCGACGGCAACGACACGCTCGGCGAAGGCAAGATCCCCGGCACCGAATATCTCG CGTACGCCGACGACGGCAGCGGCAGCAAGAACGTCACGCTGCTCGTGCAGGTGCCCGCGAGCTTCAACCCCGCGCAACCG TGCATCGTCACGGCGACGTCGTCCGGCTCGCGCGGCGTGTACGGCGCGATTTCCGCGGCCGGCGAGTGGGCGCTCAAGCG CGGCTGCGCGGTGGCCTACAACGACAAGGGCGGCGGTAACGGCGCGCACGAGCTCGGTTCCGACACCGTCACGCTGATCG ACGGCACGCTCGCCAACGCGGTGCTGGCCGGTACCGCGAGCCTGTTCACCGCGAACGTGACGAGCGGCGATCTCGCCGCA TTCAACAGCCGCTTCCCGAACCGTTATGCGTTCAAGCATGCGCACTCTCAACAGAATCCCGAGCAGGACTGGGGGCGCGT GACGCTGCAGTCGGTCGAATTCGCGTACTGGGCGCTCAACGAGCAGTTCGGACCGGTGATCGACGGTGCCCGTCACGGCG TGCGCTATCGCGCGGGCGACATCACGACGATCGCCGCGTCGGTTAGCAACGGCGGCGGCGCGTCGCTCGCTGCCGCCGAA CAGGACAATCGGGGCTGGATTACCGCGGTGGTGGTCGGCGAGCCGCAGATCAACGTGCGGATGGCGCCGAATGCGGTGGT CCGCGCGGGCGGCCAGCCGGTGCCGTCGTTCGGCCGGCCGCTGGCCGATTACGCGACGCTCGCGAACCTGCTGGAACCGT GCGCGGCCGCGTCGGCGTCGCTCGCCGGCGCGCCGTACCTGAGCGCGCTGCCGGCCACGACCACGCAGTCGATCCGCACG CAGCGCTGCGCGACGCTCGCCGCGGCCGGGCTGGTGGCGGGCGCCGACACGCAGAGCCAGGCGGCCGACGCGCTCGCGCA ACTTCACGCGGCCGGCTATCTGGCCGATTCCGACCTGCTGCAGGCACCGATGTGGGATTCGCAGGCAATTCCAGCGATCG CGGTCACCTATGCGAACGCATACACGCGCTCTCGCGTCACCGACAACCTGTGCAACTTCAGCTTCGCGACGACGAACCCG GCGACGGGCGTGGTCGCGGCGCCCGCCGCGTCGCCGATGCCGAGCGTGTTCGGCGTCGGCAACGGCGTGCCGCCGACCGC CGGCATCAATCTGGTGTTCAACGACGGCGCGGGCACCGACCACCGGCTTGCGACGCCCGACGCAAGCTTCGCGGGCGCGC TGTGCCTGCGCCAGCTGTGGACCAACGGGATGCTCGGGATGCCCGCGAACGTCGACGCGGTGCGCGTGAACGCGAACCTG CACGGCAAGCCGGCGATCATCGTGCAGGGCCGCAGCGATGCGCTCGTACCGGTGAACCATGCGTCGCGCGCGTACGTCGC GCAGAACGGCATCAGCGAAGCCGGGCGCAGCCAGCTGGTGTTCTACGAAGTGACGAACGGCCAGCACTTCGACGCGTTCC TGTCGGTGCCGGGCTTCGACACGCGCTTCGTGCCGGTTCACTACTACAACGTGCAGGCGCTGAACCTGATGTGGCGGCAT CTGAAGAACGGCGCGCCGCTGCCGCCGTCGCAGGTAATCCGCACGGTGCCGCGCGGCGGCACGCCGGGCGCCGCGCCCGC GCTGACGAGCGCGAACCTGCCGCCGATCTCGACCGCGCCGGGCGCGAACGCGATCGCGACCGGCGTCGGCACGATCGACG TGCCGCTCTGA
Upstream 100 bases:
>100_bases TTCAGGCGGGCCCCGGCATGCCGGGGCCCGTTTGCGCTTCAGAGGCCGAACGCCGCGTGCGACGCGGCGGCGGAGCGATA ACGATATCGAGGGGGCGGCG
Downstream 100 bases:
>100_bases CGGCGCCCGCCACGCGTTCTCCAGCAAGCCGGACCGTCGTCCGGCTTTTTTATTGACGTCGCCTGGAATCGGTCCCGTAC GGCCTTTTGTCCGAATGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: 3HB-oligomer hydrolase; 3HBOH
Number of amino acids: Translated: 696; Mature: 695
Protein sequence:
>696_residues MTKLGWGRRVVWGAALAAVAMLGACNGDESAERNRLPGFVSGSVRTTAYDGASDDLLTAGLGKTGLAAATAPGFANPSRP TSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNDTLGEGKIPGTEYLAYADDGSGSKNVTLLVQVPASFNPAQP CIVTATSSGSRGVYGAISAAGEWALKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGTASLFTANVTSGDLAA FNSRFPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPVIDGARHGVRYRAGDITTIAASVSNGGGASLAAAE QDNRGWITAVVVGEPQINVRMAPNAVVRAGGQPVPSFGRPLADYATLANLLEPCAAASASLAGAPYLSALPATTTQSIRT QRCATLAAAGLVAGADTQSQAADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNP ATGVVAAPAASPMPSVFGVGNGVPPTAGINLVFNDGAGTDHRLATPDASFAGALCLRQLWTNGMLGMPANVDAVRVNANL HGKPAIIVQGRSDALVPVNHASRAYVAQNGISEAGRSQLVFYEVTNGQHFDAFLSVPGFDTRFVPVHYYNVQALNLMWRH LKNGAPLPPSQVIRTVPRGGTPGAAPALTSANLPPISTAPGANAIATGVGTIDVPL
Sequences:
>Translated_696_residues MTKLGWGRRVVWGAALAAVAMLGACNGDESAERNRLPGFVSGSVRTTAYDGASDDLLTAGLGKTGLAAATAPGFANPSRP TSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNDTLGEGKIPGTEYLAYADDGSGSKNVTLLVQVPASFNPAQP CIVTATSSGSRGVYGAISAAGEWALKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGTASLFTANVTSGDLAA FNSRFPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPVIDGARHGVRYRAGDITTIAASVSNGGGASLAAAE QDNRGWITAVVVGEPQINVRMAPNAVVRAGGQPVPSFGRPLADYATLANLLEPCAAASASLAGAPYLSALPATTTQSIRT QRCATLAAAGLVAGADTQSQAADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNP ATGVVAAPAASPMPSVFGVGNGVPPTAGINLVFNDGAGTDHRLATPDASFAGALCLRQLWTNGMLGMPANVDAVRVNANL HGKPAIIVQGRSDALVPVNHASRAYVAQNGISEAGRSQLVFYEVTNGQHFDAFLSVPGFDTRFVPVHYYNVQALNLMWRH LKNGAPLPPSQVIRTVPRGGTPGAAPALTSANLPPISTAPGANAIATGVGTIDVPL >Mature_695_residues TKLGWGRRVVWGAALAAVAMLGACNGDESAERNRLPGFVSGSVRTTAYDGASDDLLTAGLGKTGLAAATAPGFANPSRPT SAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNDTLGEGKIPGTEYLAYADDGSGSKNVTLLVQVPASFNPAQPC IVTATSSGSRGVYGAISAAGEWALKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGTASLFTANVTSGDLAAF NSRFPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPVIDGARHGVRYRAGDITTIAASVSNGGGASLAAAEQ DNRGWITAVVVGEPQINVRMAPNAVVRAGGQPVPSFGRPLADYATLANLLEPCAAASASLAGAPYLSALPATTTQSIRTQ RCATLAAAGLVAGADTQSQAADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNPA TGVVAAPAASPMPSVFGVGNGVPPTAGINLVFNDGAGTDHRLATPDASFAGALCLRQLWTNGMLGMPANVDAVRVNANLH GKPAIIVQGRSDALVPVNHASRAYVAQNGISEAGRSQLVFYEVTNGQHFDAFLSVPGFDTRFVPVHYYNVQALNLMWRHL KNGAPLPPSQVIRTVPRGGTPGAAPALTSANLPPISTAPGANAIATGVGTIDVPL
Specific function: Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HBOH_BURCA (Q1BYN6)
Other databases:
- EMBL: CP000378 - RefSeq: YP_620242.1 - STRING: Q1BYN6 - GeneID: 4092853 - GenomeReviews: CP000378_GR - KEGG: bcn:Bcen_0357 - eggNOG: NOG67905 - HOGENOM: HBG288747 - OMA: NPEKDWG - ProtClustDB: CLSK896937 - BioCyc: BCEN331271:BCEN_0357-MONOMER - HAMAP: MF_01906 - InterPro: IPR016582 - PIRSF: PIRSF011409
Pfam domain/function: PF10605 3HBOH
EC number: =3.1.1.22
Molecular weight: Translated: 71694; Mature: 71563
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: ACT_SITE 309-309
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLGWGRRVVWGAALAAVAMLGACNGDESAERNRLPGFVSGSVRTTAYDGASDDLLTAG CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEECCCEEEEEECCCCCCEEECC LGKTGLAAATAPGFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGND CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC TLGEGKIPGTEYLAYADDGSGSKNVTLLVQVPASFNPAQPCIVTATSSGSRGVYGAISAA CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEHHHH GEWALKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGTASLFTANVTSGDLAA HHHHHHCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHCCCEEEEEECCCCCHHH FNSRFPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPVIDGARHGVRYRAGD HHCCCCCCHHHHHHHCCCCCCHHHHEEEEEHEEEEEEEECCCCCCHHHHHHCCCEEECCC ITTIAASVSNGGGASLAAAEQDNRGWITAVVVGEPQINVRMAPNAVVRAGGQPVPSFGRP EEEEEEECCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEECCCHHEECCCCCCCHHCCC LADYATLANLLEPCAAASASLAGAPYLSALPATTTQSIRTQRCATLAAAGLVAGADTQSQ HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH AADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNP HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCC ATGVVAAPAASPMPSVFGVGNGVPPTAGINLVFNDGAGTDHRLATPDASFAGALCLRQLW CCCEEECCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHH TNGMLGMPANVDAVRVNANLHGKPAIIVQGRSDALVPVNHASRAYVAQNGISEAGRSQLV HCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCCCCEEE FYEVTNGQHFDAFLSVPGFDTRFVPVHYYNVQALNLMWRHLKNGAPLPPSQVIRTVPRGG EEEECCCCEEEEEEECCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC TPGAAPALTSANLPPISTAPGANAIATGVGTIDVPL CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCC >Mature Secondary Structure TKLGWGRRVVWGAALAAVAMLGACNGDESAERNRLPGFVSGSVRTTAYDGASDDLLTAG CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEECCCEEEEEECCCCCCEEECC LGKTGLAAATAPGFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGND CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC TLGEGKIPGTEYLAYADDGSGSKNVTLLVQVPASFNPAQPCIVTATSSGSRGVYGAISAA CCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEHHHH GEWALKRGCAVAYNDKGGGNGAHELGSDTVTLIDGTLANAVLAGTASLFTANVTSGDLAA HHHHHHCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHCCCEEEEEECCCCCHHH FNSRFPNRYAFKHAHSQQNPEQDWGRVTLQSVEFAYWALNEQFGPVIDGARHGVRYRAGD HHCCCCCCHHHHHHHCCCCCCHHHHEEEEEHEEEEEEEECCCCCCHHHHHHCCCEEECCC ITTIAASVSNGGGASLAAAEQDNRGWITAVVVGEPQINVRMAPNAVVRAGGQPVPSFGRP EEEEEEECCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEECCCHHEECCCCCCCHHCCC LADYATLANLLEPCAAASASLAGAPYLSALPATTTQSIRTQRCATLAAAGLVAGADTQSQ HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH AADALAQLHAAGYLADSDLLQAPMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTNP HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCC ATGVVAAPAASPMPSVFGVGNGVPPTAGINLVFNDGAGTDHRLATPDASFAGALCLRQLW CCCEEECCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHH TNGMLGMPANVDAVRVNANLHGKPAIIVQGRSDALVPVNHASRAYVAQNGISEAGRSQLV HCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCCCCCEEE FYEVTNGQHFDAFLSVPGFDTRFVPVHYYNVQALNLMWRHLKNGAPLPPSQVIRTVPRGG EEEECCCCEEEEEEECCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC TPGAAPALTSANLPPISTAPGANAIATGVGTIDVPL CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA