| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688862
Identifier: 116688862
GI number: 116688862
Start: 942574
End: 942939
Strand: Direct
Name: 116688862
Synonym: Bcen2424_0839
Alternate gene names: NA
Gene position: 942574-942939 (Clockwise)
Preceding gene: 116688858
Following gene: 116688863
Centisome position: 27.06
GC content: 66.94
Gene sequence:
>366_bases ATGAAGTCGATCGTGTTGAGAGCGTTGGGTGTCGCCGCCGTGGCGGCCTGTCTGTCGGGCAGCGTGTATGCGCAGTCGAG CGACGCAGCGGCCACGGAAGCGCCGGCGGCGGCGAGCAGCGCGCCGAAGGCCGCCGCGAAAACCGCGAAGAAGGCGAACC GCAAGCTCGGCTACGCGGTGCGCAAGGCCATTACGAAGGCAGGCGGCATCGACGTGGCGAACATCGTCGTGCGTTCGAAG GGCGGCGCGATCTCGCTGGAGGGCACGGTGCCCGACCAGGCACAGATCGACAAGGCGGAAGAGGCGGCGAAGAGCGTGAA GGGCGTGACGTCGGTCACGAACAAGCTGACGGTTCAGCAGCAGTAA
Upstream 100 bases:
>100_bases GAAAACACCGGCTGTCCCGCCCGTTCGCGCGCGGGCCGGCTGTTTTTGGGGGTATTCGGCCGTACTGTGCACGGCCGTTC CGGAGTGATAAGGAGATAGC
Downstream 100 bases:
>100_bases CGCCGGGCGGCGGCGCGCGAGCGCCGCGTGCGCCCGTTTTCAGGCGGGCCCCGGCATGCCGGGGCCCGTTTGCGCTTCAG AGGCCGAACGCCGCGTGCGA
Product: transport-associated
Products: NA
Alternate protein names: Transport-Associated Domain-Containing Protein
Number of amino acids: Translated: 121; Mature: 121
Protein sequence:
>121_residues MKSIVLRALGVAAVAACLSGSVYAQSSDAAATEAPAAASSAPKAAAKTAKKANRKLGYAVRKAITKAGGIDVANIVVRSK GGAISLEGTVPDQAQIDKAEEAAKSVKGVTSVTNKLTVQQQ
Sequences:
>Translated_121_residues MKSIVLRALGVAAVAACLSGSVYAQSSDAAATEAPAAASSAPKAAAKTAKKANRKLGYAVRKAITKAGGIDVANIVVRSK GGAISLEGTVPDQAQIDKAEEAAKSVKGVTSVTNKLTVQQQ >Mature_121_residues MKSIVLRALGVAAVAACLSGSVYAQSSDAAATEAPAAASSAPKAAAKTAKKANRKLGYAVRKAITKAGGIDVANIVVRSK GGAISLEGTVPDQAQIDKAEEAAKSVKGVTSVTNKLTVQQQ
Specific function: Unknown
COG id: COG2823
COG function: function code R; Predicted periplasmic or secreted lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12065; Mature: 12065
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: PS50914 BON
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIVLRALGVAAVAACLSGSVYAQSSDAAATEAPAAASSAPKAAAKTAKKANRKLGYAV CCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH RKAITKAGGIDVANIVVRSKGGAISLEGTVPDQAQIDKAEEAAKSVKGVTSVTNKLTVQQ HHHHHHCCCCCHHHEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC Q C >Mature Secondary Structure MKSIVLRALGVAAVAACLSGSVYAQSSDAAATEAPAAASSAPKAAAKTAKKANRKLGYAV CCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH RKAITKAGGIDVANIVVRSKGGAISLEGTVPDQAQIDKAEEAAKSVKGVTSVTNKLTVQQ HHHHHHCCCCCHHHEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC Q C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA