| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688864
Identifier: 116688864
GI number: 116688864
Start: 945785
End: 947620
Strand: Direct
Name: 116688864
Synonym: Bcen2424_0841
Alternate gene names: NA
Gene position: 945785-947620 (Clockwise)
Preceding gene: 116688863
Following gene: 116688865
Centisome position: 27.15
GC content: 66.07
Gene sequence:
>1836_bases ATGTCGACACGGAAGTCCTTGAAAGACGGTTTCGCGCTATTCGGAACGACCTTGAGCGTACCGCTCGCCGCCGCAGCGGC CGCGGCGCTGCTCGTCACGGGGTGCGGCGGCGACGACGGGCCGAGCCCGAGCGCGTCGGCCGCCACCGCGGCTGCGACGA CCAGCGGCAGCACGTCGGCCGCCACCGACGCAACGGCCGCCGCCGCGGCCGACCAGCCGTACGTCGACACCGACGTGTAC GGCACCGGGCCGAACGACGCGGTCACGGATTCGACGGAAGGCGCCGCGGTCGTGCACCGCCAGGTCACGATCGGCGGCAA GACGATCAAGTACACGGCCACCACCGGCCACCTGACGACGATCGATCCGGTCACGTCGGCGCCGAACGCGAAGATGTTCT ACGTCGCGTACACGCAGGACAATCCGGACCCGTCGAAGCCGCGTCCGGTCACGTTCTTCTACAACGGCGGCCCCGGTTCG TCGTCGGTCTACCTGCTGCTCGGCTCGTACGGGCCGAAGCGCCTGCAGTCGTCGTTCCCGAACTTCACGCCGCCCGCGCC GTACAAGCTGCTCGACAACCCGGACAGCCTGCTCGACCGCACCGACCTGGTGTTCATCAACCCGGTCGGCACTGGTTATT CAACCGCGATCGCACCGGCGAAGAACAAGGACTTCTGGGGCACCGACCAGGACGCGCGCTCGATCGACCGCTTCATTCAG CGCTACCTGACCAAGTACTCGCGCTGGAATTCGCCGAAGTTCCTGTACGGCGAGTCGTACGGCACCGCGCGCAGCGCGGT CGTGTCGTGGGTGCTGCACGAGGACGGCATCGACCTGAACGGGATCACGCTGCAGTCGTCGATCCTCGACTATGCGAACG CGCTGTCCGCGCCGGGCACGTTCCCGACACTCGCGGCCGACGCGTTCTACTGGAAGAAGACGACGCTCAACCCGACGCCG ACCGATCTCGACGCGTACATGGTCCAGGCCCGCAACTACGCGGACAACACGCTCGCGCCGCTCGCGCAGAAGCCGAACCC GCAGGACGGCGGCTTCGTGAACGTGCGGCTGAACCTGAAGCTCGCGATCGCGCAGCAGATGGGCGCGTACATCGGCACGG ACCCGACGTCGCTGATCCAGACCTTCGGCAACCCGGCCGCGCTCGGCAACGTGCCGTCGTCGGATGACAACCCGCCGTAC ACGTTCTTCCTGACGCTGGTGCCGGGCACGCAGATCGGCCAGTACGATGGTCGCGCGAACTTCACGGGCAAGGGCATCGC GCCGTACATCCTGCCGAACTCGGGCAGCAACGATCCGTCGATCACGAACGTCGGCGGCGCGTACACGGTGCTGTGGAACA GCTACATCAACACCGACCTCAAGTACACGTCGACGTCGTCGTTCGTGGACCTGAACGACCAGGTCTTCAACAACTGGGAC TTCAGTCACATCGACCCGACCGGCGCGAACAAGGGGGGCGGCAATACGCTGTACACGGCCGGCGACCTGGCGTCGACGAT GAGCGTGAACCCGGACCTGAAGGTGCTGTCGGCGAACGGCTATTTCGACGCCGTCACGCCGTTCCACCAGACGGAGCTGA CGCTTGCGCAGATGCCGCTCGATCCGACGCTCAAGGCGCAGAACCTGACGATCAAGAACTACCCGTCGGGCCACATGATC TACCTGAACGACGCGTCGCGGACCGCGCTGAAGGGCGATCTCGCCAGCTTCTACGACGGCATCCTCGCGAACCGCACCGC GCTGCAGCGCGTGCTGAAACTGCAGGCGCGCACACAGCAACTGAAGCAGCAGAAACTGCAGCAGCAGGGGCAGTAA
Upstream 100 bases:
>100_bases TCGGAGTGCGTCGCATAACGAATGCATTCCCGGTGCGGAGCGCCGGCGCAAATGATCCTTTGCGGCCGGCGGTATTTATC GTTCTGTTCGAGAGGCAATA
Downstream 100 bases:
>100_bases GCGTGGCGGGCGGCGGGCGATGCCCGCCGCGACGCGACGAACAAGTGCACTCGCGCAATGCGGGCCGGTGCTTCAGGTCG CGTGCGTTGGTGACGTCGCT
Product: peptidase S10, serine carboxypeptidase
Products: NA
Alternate protein names: Serine Carboxypeptidase Family Protein; Carboxypeptidase-Related Protein; Serine Carboxypeptidase; Carboxypeptidase C; Serine-Type Carboxypeptidase Family Protein; Carboxypeptidase; S10 Family Peptidase; S10 Family Carboxypeptidase; Carboxypeptidase-Like Protein; Peptidase S; Serine Carboxypeptidase Superfamily
Number of amino acids: Translated: 611; Mature: 610
Protein sequence:
>611_residues MSTRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGPSPSASAATAAATTSGSTSAATDATAAAAADQPYVDTDVY GTGPNDAVTDSTEGAAVVHRQVTIGGKTIKYTATTGHLTTIDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGS SSVYLLLGSYGPKRLQSSFPNFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQ RYLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGTFPTLAADAFYWKKTTLNPTP TDLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLKLAIAQQMGAYIGTDPTSLIQTFGNPAALGNVPSSDDNPPY TFFLTLVPGTQIGQYDGRANFTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWD FSHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPTLKAQNLTIKNYPSGHMI YLNDASRTALKGDLASFYDGILANRTALQRVLKLQARTQQLKQQKLQQQGQ
Sequences:
>Translated_611_residues MSTRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGPSPSASAATAAATTSGSTSAATDATAAAAADQPYVDTDVY GTGPNDAVTDSTEGAAVVHRQVTIGGKTIKYTATTGHLTTIDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGS SSVYLLLGSYGPKRLQSSFPNFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQ RYLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGTFPTLAADAFYWKKTTLNPTP TDLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLKLAIAQQMGAYIGTDPTSLIQTFGNPAALGNVPSSDDNPPY TFFLTLVPGTQIGQYDGRANFTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWD FSHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPTLKAQNLTIKNYPSGHMI YLNDASRTALKGDLASFYDGILANRTALQRVLKLQARTQQLKQQKLQQQGQ >Mature_610_residues STRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGPSPSASAATAAATTSGSTSAATDATAAAAADQPYVDTDVYG TGPNDAVTDSTEGAAVVHRQVTIGGKTIKYTATTGHLTTIDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGSS SVYLLLGSYGPKRLQSSFPNFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQR YLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGTFPTLAADAFYWKKTTLNPTPT DLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLKLAIAQQMGAYIGTDPTSLIQTFGNPAALGNVPSSDDNPPYT FFLTLVPGTQIGQYDGRANFTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWDF SHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPTLKAQNLTIKNYPSGHMIY LNDASRTALKGDLASFYDGILANRTALQRVLKLQARTQQLKQQKLQQQGQ
Specific function: Unknown
COG id: COG2939
COG function: function code E; Carboxypeptidase C (cathepsin A)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65179; Mature: 65048
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGPSPSASAATAAATTSGSTSA CCCHHHHHCCCEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHEEEECCCCCCC ATDATAAAAADQPYVDTDVYGTGPNDAVTDSTEGAAVVHRQVTIGGKTIKYTATTGHLTT CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEEE IDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGSSSVYLLLGSYGPKRLQSSFP ECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHCCC NFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQ CCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH RYLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGT HHHHHHHCCCCCCEEECCCCCHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHCCCCC FPTLAADAFYWKKTTLNPTPTDLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLK CCHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEEEEEE LAIAQQMGAYIGTDPTSLIQTFGNPAALGNVPSSDDNPPYTFFLTLVPGTQIGQYDGRAN EEEHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCEECCCCCCCC FTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWD CCCCCCCCEEECCCCCCCCCEEECCCEEEEEEHHHHCCCEEECCCCCEEECCHHHHCCCC FSHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPL CCCCCCCCCCCCCCCEEEECCCCHHHEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCC DPTLKAQNLTIKNYPSGHMIYLNDASRTALKGDLASFYDGILANRTALQRVLKLQARTQQ CCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKQQKLQQQGQ HHHHHHHHCCC >Mature Secondary Structure STRKSLKDGFALFGTTLSVPLAAAAAAALLVTGCGGDDGPSPSASAATAAATTSGSTSA CCHHHHHCCCEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHEEEECCCCCCC ATDATAAAAADQPYVDTDVYGTGPNDAVTDSTEGAAVVHRQVTIGGKTIKYTATTGHLTT CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEEE IDPVTSAPNAKMFYVAYTQDNPDPSKPRPVTFFYNGGPGSSSVYLLLGSYGPKRLQSSFP ECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHCCC NFTPPAPYKLLDNPDSLLDRTDLVFINPVGTGYSTAIAPAKNKDFWGTDQDARSIDRFIQ CCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH RYLTKYSRWNSPKFLYGESYGTARSAVVSWVLHEDGIDLNGITLQSSILDYANALSAPGT HHHHHHHCCCCCCEEECCCCCHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHCCCCC FPTLAADAFYWKKTTLNPTPTDLDAYMVQARNYADNTLAPLAQKPNPQDGGFVNVRLNLK CCHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEEEEEE LAIAQQMGAYIGTDPTSLIQTFGNPAALGNVPSSDDNPPYTFFLTLVPGTQIGQYDGRAN EEEHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCEECCCCCCCC FTGKGIAPYILPNSGSNDPSITNVGGAYTVLWNSYINTDLKYTSTSSFVDLNDQVFNNWD CCCCCCCCEEECCCCCCCCCEEECCCEEEEEEHHHHCCCEEECCCCCEEECCHHHHCCCC FSHIDPTGANKGGGNTLYTAGDLASTMSVNPDLKVLSANGYFDAVTPFHQTELTLAQMPL CCCCCCCCCCCCCCCEEEECCCCHHHEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCC DPTLKAQNLTIKNYPSGHMIYLNDASRTALKGDLASFYDGILANRTALQRVLKLQARTQQ CCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKQQKLQQQGQ HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA