| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is mpl [H]
Identifier: 116688633
GI number: 116688633
Start: 680405
End: 681790
Strand: Direct
Name: mpl [H]
Synonym: Bcen2424_0610
Alternate gene names: 116688633
Gene position: 680405-681790 (Clockwise)
Preceding gene: 116688631
Following gene: 116688634
Centisome position: 19.53
GC content: 68.61
Gene sequence:
>1386_bases ATGCACATCCACATTCTTGGCATCTGCGGCACCTTCATGGGCGGTCTCGCCGTACTCGCACGCGAGGCGGGCCACACGGT GACGGGTTGCGACGCGGGCGTCTATCCGCCGATGAGCACGCAGCTCGAGGCGCAGGGCATCACGCTGATCGAGGGCTACG GCGCCGAGCAGGTCGACCTGAAGCCGGACCTGTTCGTGATCGGCAACGTCGTCACGCGCGGCAATCCGCTGATGGAGGCG ATTCTCGATCGCGGCCTGCCTTACGTGTCGGGCCCGCAGTGGCTCGGCGAGCACGTGCTGGCCGGCAAATGGGTGCTCGC GGTCGCGGGCACGCACGGCAAGACGACCACATCGTCGATGCTCGCGTGGCTGCTGGAAGACGCAGGTCTCAATCCGGGCT TCCTGATCGGCGGCGTGCCGCTGAACTTCGGCGTGTCCGCGCGGCTCACCGATTCGAGCTTCTTCGTGATCGAGGCCGAC GAGTACGACACGGCATTCTTCGACAAGCGCTCGAAGTTCGTGCACTACCGGCTGCGCACCGCGGTGCTGAACAACCTCGA ATTCGATCACGCCGACATCTTCCCCGATCTTGCCGCGATCGAAACGCAATTCCATCATCTGGTGCGCACCGTGCCCGGCG TCGGGCGGATCGTCACGAACGGCCGCTCGGACGCCCTCGAGCGCGTGCTGGCGCGCGGCTGCTGGAGCGAGGTCGAACGC TTCGGCGTCGACGGCGGCTGGCAGGCGCTGCCGGCCGAGGACGGCGTGCCGGTCGACGAACGCTTCGCGGTGTATTCGCA TGCCGGGCGCGTCGGCGAAGTCGCATGGCAGGTGCAGGGCGACCACAACCGGATGAACGCGCTCGCGGCGATCGCCGCCG CGCGCCACGTCGGCGTGCCGCCAGCGCAGGCGGCCGAATCGCTCGCCTCGTTCCGCAACGTGAAGCGCCGCATGGAAGTG CGCGGCAGCGTGGACGGCGTGACCGTCTATGACGACTTCGCGCACCATCCGACCGCGATCGACACCACGATCGCCGGCCT TCGTGCGCGCATCGGCCGCCAGAATGCCCGCATCCTCGCCGTGCTCGAGCCGCGCTCGAACACGATGAAGCTCGGCGTGA TGAAGTCGCAGTTGCCGGCGAGCCTCGCCGATGCCGATCTCGTGTTCGGCTACGGCGCGCCGACCGGGCGCGATGCGCTC GGCTGGAATCTCGCCGAAGCGCTCGCGCCGCTCGGCGACCGCGCACGCGCCTTCGACGATCTGCATCTGCTGGTGAAGGC GGTGGTCGAGGCCGCGCGTCCGGGCGATCACGTGCTCGTGATGAGCAACGGCGGCTTCGGCGGCGTGCACCAGAAGCTGC TCGATGCGCTCGGGAGCCGCCCGTGA
Upstream 100 bases:
>100_bases CAAAGTCGTGGGCCGGACGCCGGCCGCACGGCCCGTCCGGCGCGACACACACGCATCCTTTCCGAATCGACGGCGCCCGG CGGCGCGAAAGCATTCCTCT
Downstream 100 bases:
>100_bases TCCTGTATCTGCACGGCTTCCGGTCGTCGCCGGAATCGCAGAAGTCGCGACTGCTCGCCGCGCGCATGGCCGAACTCGGC CGCACCGGCGAGTGGCGGTG
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MHIHILGICGTFMGGLAVLAREAGHTVTGCDAGVYPPMSTQLEAQGITLIEGYGAEQVDLKPDLFVIGNVVTRGNPLMEA ILDRGLPYVSGPQWLGEHVLAGKWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEAD EYDTAFFDKRSKFVHYRLRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNGRSDALERVLARGCWSEVER FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEV RGSVDGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLADADLVFGYGAPTGRDAL GWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVMSNGGFGGVHQKLLDALGSRP
Sequences:
>Translated_461_residues MHIHILGICGTFMGGLAVLAREAGHTVTGCDAGVYPPMSTQLEAQGITLIEGYGAEQVDLKPDLFVIGNVVTRGNPLMEA ILDRGLPYVSGPQWLGEHVLAGKWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEAD EYDTAFFDKRSKFVHYRLRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNGRSDALERVLARGCWSEVER FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEV RGSVDGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLADADLVFGYGAPTGRDAL GWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVMSNGGFGGVHQKLLDALGSRP >Mature_461_residues MHIHILGICGTFMGGLAVLAREAGHTVTGCDAGVYPPMSTQLEAQGITLIEGYGAEQVDLKPDLFVIGNVVTRGNPLMEA ILDRGLPYVSGPQWLGEHVLAGKWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEAD EYDTAFFDKRSKFVHYRLRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNGRSDALERVLARGCWSEVER FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEV RGSVDGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLADADLVFGYGAPTGRDAL GWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLVMSNGGFGGVHQKLLDALGSRP
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=460, Percent_Identity=59.7826086956522, Blast_Score=540, Evalue=1e-155, Organism=Escherichia coli, GI1786279, Length=362, Percent_Identity=28.1767955801105, Blast_Score=102, Evalue=7e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 49438; Mature: 49438
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIHILGICGTFMGGLAVLAREAGHTVTGCDAGVYPPMSTQLEAQGITLIEGYGAEQVDL CEEEEEEHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEECC KPDLFVIGNVVTRGNPLMEAILDRGLPYVSGPQWLGEHVLAGKWVLAVAGTHGKTTTSSM CCCEEEEECHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHH LAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEYDTAFFDKRSKFVHYRLRT HHHHHHHCCCCCCEEEECCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHH AVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNGRSDALERVLARGCWSEVER HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVP HCCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCC PAQAAESLASFRNVKRRMEVRGSVDGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILA HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEE VLEPRSNTMKLGVMKSQLPASLADADLVFGYGAPTGRDALGWNLAEALAPLGDRARAFDD EECCCCCCEEEEEEHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHHHHH LHLLVKAVVEAARPGDHVLVMSNGGFGGVHQKLLDALGSRP HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MHIHILGICGTFMGGLAVLAREAGHTVTGCDAGVYPPMSTQLEAQGITLIEGYGAEQVDL CEEEEEEHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEECC KPDLFVIGNVVTRGNPLMEAILDRGLPYVSGPQWLGEHVLAGKWVLAVAGTHGKTTTSSM CCCEEEEECHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHH LAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEYDTAFFDKRSKFVHYRLRT HHHHHHHCCCCCCEEEECCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHH AVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNGRSDALERVLARGCWSEVER HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQVQGDHNRMNALAAIAAARHVGVP HCCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCC PAQAAESLASFRNVKRRMEVRGSVDGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILA HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEE VLEPRSNTMKLGVMKSQLPASLADADLVFGYGAPTGRDALGWNLAEALAPLGDRARAFDD EECCCCCCEEEEEEHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHHHHH LHLLVKAVVEAARPGDHVLVMSNGGFGGVHQKLLDALGSRP HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]