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The map label for this gene is ydcM [C]

Identifier: 116688631

GI number: 116688631

Start: 679084

End: 679512

Strand: Direct

Name: ydcM [C]

Synonym: Bcen2424_0608

Alternate gene names: 116688631

Gene position: 679084-679512 (Clockwise)

Preceding gene: 116688621

Following gene: 116688633

Centisome position: 19.49

GC content: 58.74

Gene sequence:

>429_bases
ATGGCAAATGCCCGTGTCGATTTCCAGCATAAGCTCGCGCTCGATCTGGTGCGGCGCTTCGATTACATCGCGGTTGGCAA
CGTATCTGCCGTCAAACTCGCCAGAACCAGGATGGCGAAGAGCGTCTACGACGCATCCTGGTCGTCCTTCCGAAACAAGC
TCCGCTACAAAGCGATCGCGCACGGGGCCCTGTTCGAGGAAGTCGACGAAAGCGGTTCGACCCAGTTCTGCTCGGCGTGC
GGGTCGAAAGACAGCACGACGCGGCCGAAAGGTATCGCGGGACTGAGAATAAGGGAGTGGGTCTGCAGTGACTGTGGTGT
CGAGCATGATCGAGATACCAACGCTGCGCTGAACATTCTCCGATGCGGACGTGCATCGCCAGGTGTGGGAATCCTCTGCC
TTTTGGGCGGAGGAGGACGTCAACGTTGA

Upstream 100 bases:

>100_bases
GCTGCCCAATGACCCGTTCGGTCGACGAGCGGCGGAAAAGCTGGCGAAAGCGCAACGGGCGCGAAAGCACAAGCGGCATA
GCGCGAAGTTGCACGCCAAG

Downstream 100 bases:

>100_bases
ATCATTCCGGTTCGGAAGGGGCCTGGCCTGCCTCGACGAGCGCGCGCAGTGCGGCGGCGTCCGCGCGGGCAACGCGGCCG
CGCGCGTCGGCCTTCACCGC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MANARVDFQHKLALDLVRRFDYIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGALFEEVDESGSTQFCSAC
GSKDSTTRPKGIAGLRIREWVCSDCGVEHDRDTNAALNILRCGRASPGVGILCLLGGGGRQR

Sequences:

>Translated_142_residues
MANARVDFQHKLALDLVRRFDYIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGALFEEVDESGSTQFCSAC
GSKDSTTRPKGIAGLRIREWVCSDCGVEHDRDTNAALNILRCGRASPGVGILCLLGGGGRQR
>Mature_141_residues
ANARVDFQHKLALDLVRRFDYIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIAHGALFEEVDESGSTQFCSACG
SKDSTTRPKGIAGLRIREWVCSDCGVEHDRDTNAALNILRCGRASPGVGILCLLGGGGRQR

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 15494; Mature: 15363

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANARVDFQHKLALDLVRRFDYIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIA
CCCCCCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGALFEEVDESGSTQFCSACGSKDSTTRPKGIAGLRIREWVCSDCGVEHDRDTNAALNIL
HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RCGRASPGVGILCLLGGGGRQR
HCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
ANARVDFQHKLALDLVRRFDYIAVGNVSAVKLARTRMAKSVYDASWSSFRNKLRYKAIA
CCCCCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGALFEEVDESGSTQFCSACGSKDSTTRPKGIAGLRIREWVCSDCGVEHDRDTNAALNIL
HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RCGRASPGVGILCLLGGGGRQR
HCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]