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The map label for this gene is deoB [H]

Identifier: 116625556

GI number: 116625556

Start: 8151193

End: 8152356

Strand: Reverse

Name: deoB [H]

Synonym: Acid_6503

Alternate gene names: 116625556

Gene position: 8152356-8151193 (Counterclockwise)

Preceding gene: 116625557

Following gene: 116625555

Centisome position: 81.8

GC content: 61.77

Gene sequence:

>1164_bases
GTGTTTCAACGCGTGATCTGGATTGTCCTCGATAGTGTGGGAATCGGCGAGATGCCCGATGCCGCGCAGTATGGCGACGC
GGGCAGCGACACGCTGGGCAATATCGCGCGCATTCGGGGCATCAAGCTGCCGAACATGGCGCGGCTCGGCCTTGGCAACA
TCAAGCCGCTGGCAGGGATCGCACCCGCGGGATCGCCGGCGGGGGCTTTCGGGAAATGCACTCTCGCGTCCCCGGGGAAG
GATACGACCACCGGACATTGGGAGATGGTGGGTATTCACCTTGCCAAGCCGTTTCCGCTGTATCCGCAGGGATTTCCCGC
CGATGTGATGAGTGAATTCGAGCGCCGTACGGGGCGCCGCGCGTTGGGAAACAAGGCCGCGTCCGGGACGGAGATCATCA
AGGAATTGGGCGAGGAGCACATGCGCACGGGGTCGCCGATTGTGTACACGTCGGCCGATTCGGTCTTCCAGATCGCCGCG
CATGAAGAAGTGATCCCGCTCTGGGAACTGTACAAGATGTGCGAGACGGCGCGCGATATTCTGCGCGGACCGCACGAGGT
GGGCCGCGTGATTGCGCGCCCGTTTACCGGCTCGCCCGGCAACTTCGCGCGGACCAGCAATCGCCACGATTACGCGGTGC
CGCCGCCCAAGGGCATGTTGCTGGATCAACTCCACGACCGCCAGATTCAGGTGCACAGCGTCGGTAAGATTTTCGATGTC
TTTCTGGGGCGCGGCATTCAGGAATCCACCAAGACGAAGAACAATGCCGAGGGCATGGCGGAGACGCTGAATGCGATGCA
GGAGATGGATCGCGGGATGATCTTCGTCAACCTCGTGGATTTTGATCAACAATATGGCCACCGCAACAATGTGGAAGGCT
ACGCCGCGGCGCTCGAAGAATTCGATGCCTGGGTGCCAGGATTCGAGGCCGTACTGCGCGAGGGCGATCTCGCGATTCTC
ACCGCCGACCACGGGTGCGATCCCACTACCCCATCGACCGATCACAGCCGCGAGTTCGTGCCGCTGCTGGTTTCCGGCCC
CAAAGTGCGCGCCGGAGTCGATTTGGGAGTGCGCGGATCGCTGAGCGATATCGGCCAGACGGTGGCCGAGAACTTCGGCG
CGCGGATCGCGCAGGGACAAAGCTTTTTATCACAACTATTATGA

Upstream 100 bases:

>100_bases
CGGCGAATTTTCCGGTGCGGGTAATACAAGAGCGGGGTGACGGTGTTCTCGGCGGTGCGGCCAAGGCGGACGCCCCTGAA
CAGATGTTAAAGTCGAATTT

Downstream 100 bases:

>100_bases
GAAAACCAGTCATGGCGGGCAATTGGAAGATGTACAAAACGCCCGCGGAAACCATTGCGTTCTTCGAGAAATTCCGGCCG
CTGGTCGAGAAGTCCTCGCA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MFQRVIWIVLDSVGIGEMPDAAQYGDAGSDTLGNIARIRGIKLPNMARLGLGNIKPLAGIAPAGSPAGAFGKCTLASPGK
DTTTGHWEMVGIHLAKPFPLYPQGFPADVMSEFERRTGRRALGNKAASGTEIIKELGEEHMRTGSPIVYTSADSVFQIAA
HEEVIPLWELYKMCETARDILRGPHEVGRVIARPFTGSPGNFARTSNRHDYAVPPPKGMLLDQLHDRQIQVHSVGKIFDV
FLGRGIQESTKTKNNAEGMAETLNAMQEMDRGMIFVNLVDFDQQYGHRNNVEGYAAALEEFDAWVPGFEAVLREGDLAIL
TADHGCDPTTPSTDHSREFVPLLVSGPKVRAGVDLGVRGSLSDIGQTVAENFGARIAQGQSFLSQLL

Sequences:

>Translated_387_residues
MFQRVIWIVLDSVGIGEMPDAAQYGDAGSDTLGNIARIRGIKLPNMARLGLGNIKPLAGIAPAGSPAGAFGKCTLASPGK
DTTTGHWEMVGIHLAKPFPLYPQGFPADVMSEFERRTGRRALGNKAASGTEIIKELGEEHMRTGSPIVYTSADSVFQIAA
HEEVIPLWELYKMCETARDILRGPHEVGRVIARPFTGSPGNFARTSNRHDYAVPPPKGMLLDQLHDRQIQVHSVGKIFDV
FLGRGIQESTKTKNNAEGMAETLNAMQEMDRGMIFVNLVDFDQQYGHRNNVEGYAAALEEFDAWVPGFEAVLREGDLAIL
TADHGCDPTTPSTDHSREFVPLLVSGPKVRAGVDLGVRGSLSDIGQTVAENFGARIAQGQSFLSQLL
>Mature_387_residues
MFQRVIWIVLDSVGIGEMPDAAQYGDAGSDTLGNIARIRGIKLPNMARLGLGNIKPLAGIAPAGSPAGAFGKCTLASPGK
DTTTGHWEMVGIHLAKPFPLYPQGFPADVMSEFERRTGRRALGNKAASGTEIIKELGEEHMRTGSPIVYTSADSVFQIAA
HEEVIPLWELYKMCETARDILRGPHEVGRVIARPFTGSPGNFARTSNRHDYAVPPPKGMLLDQLHDRQIQVHSVGKIFDV
FLGRGIQESTKTKNNAEGMAETLNAMQEMDRGMIFVNLVDFDQQYGHRNNVEGYAAALEEFDAWVPGFEAVLREGDLAIL
TADHGCDPTTPSTDHSREFVPLLVSGPKVRAGVDLGVRGSLSDIGQTVAENFGARIAQGQSFLSQLL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=396, Percent_Identity=46.7171717171717, Blast_Score=313, Evalue=9e-87,
Organism=Escherichia coli, GI1789781, Length=413, Percent_Identity=28.8135593220339, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 41920; Mature: 41920

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQRVIWIVLDSVGIGEMPDAAQYGDAGSDTLGNIARIRGIKLPNMARLGLGNIKPLAGI
CCHHEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
APAGSPAGAFGKCTLASPGKDTTTGHWEMVGIHLAKPFPLYPQGFPADVMSEFERRTGRR
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
ALGNKAASGTEIIKELGEEHMRTGSPIVYTSADSVFQIAAHEEVIPLWELYKMCETARDI
HHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHCCCCCCHHHHHHHHHHHHHH
LRGPHEVGRVIARPFTGSPGNFARTSNRHDYAVPPPKGMLLDQLHDRQIQVHSVGKIFDV
HHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHHH
FLGRGIQESTKTKNNAEGMAETLNAMQEMDRGMIFVNLVDFDQQYGHRNNVEGYAAALEE
HHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCHHHHHHHHH
FDAWVPGFEAVLREGDLAILTADHGCDPTTPSTDHSREFVPLLVSGPKVRAGVDLGVRGS
HHHCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
LSDIGQTVAENFGARIAQGQSFLSQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFQRVIWIVLDSVGIGEMPDAAQYGDAGSDTLGNIARIRGIKLPNMARLGLGNIKPLAGI
CCHHEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
APAGSPAGAFGKCTLASPGKDTTTGHWEMVGIHLAKPFPLYPQGFPADVMSEFERRTGRR
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
ALGNKAASGTEIIKELGEEHMRTGSPIVYTSADSVFQIAAHEEVIPLWELYKMCETARDI
HHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHCCCCCCHHHHHHHHHHHHHH
LRGPHEVGRVIARPFTGSPGNFARTSNRHDYAVPPPKGMLLDQLHDRQIQVHSVGKIFDV
HHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHHH
FLGRGIQESTKTKNNAEGMAETLNAMQEMDRGMIFVNLVDFDQQYGHRNNVEGYAAALEE
HHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCHHHHHHHHH
FDAWVPGFEAVLREGDLAILTADHGCDPTTPSTDHSREFVPLLVSGPKVRAGVDLGVRGS
HHHCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
LSDIGQTVAENFGARIAQGQSFLSQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]