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The map label for this gene is ykgD [C]

Identifier: 116623570

GI number: 116623570

Start: 5671996

End: 5673003

Strand: Direct

Name: ykgD [C]

Synonym: Acid_4480

Alternate gene names: 116623570

Gene position: 5671996-5673003 (Clockwise)

Preceding gene: 116623565

Following gene: 116623571

Centisome position: 56.92

GC content: 57.44

Gene sequence:

>1008_bases
ATGGAGGCTCAGTTGGACCCGATAACAGACATCTTCAGAACCATGCACGTAACCGCTTTCGGTCAGCACAGGCTCGAAGC
CACAGCCCCGTGGGGCTTGATGCAGGAAAAGCGGACCGAAGAGAAACTCACGCCTTCCGGCCAAATAGATTCACCCACAG
ATCTGGCGCACTACGCCATGCTGTCGCGCGGTAACTGCTGGCTCAGCGTCGGAGGCATTCCGGACCCGATTCCCCTCACC
GGTGGCGACTGCTTCTTGGTGGACCGCGACACCTCGATCGTCATGCGCGATAGCCCGCGAACACGTCCAAGGTCAACCTT
CGGCGAAGTCGCCGCCAAAGCCGACGGGAATGTCGCTCATCATGGAGGGGGTGGCGCGCCGACGACAATCGTCTGTGGGT
CCATGAGTTTCGATCGCGCCAGCCTGAGGCCGATCACTCAGTTATTGCCGAGCTTCATTCTGATTAGGGCCGAGCAGGCA
CGCACGCTGGCTCTTCACGACACAATGCGAGCGCTGTCGTCAGAAATGGCAGAGCAGGCGCCGGGATCTGAAATAGTCGC
GAATCGGCTAGCCGAAGTCCTGTTTATCCAAATACTCCGGGCGCATATCGCGTCGGGACCGGAGCGTAACAAAGGATGGC
TCCGTGCGATCTTCGATCCTAAAATGGGCACTGCCCTGAGTGCCATTCACGACAGTGTGAAAACACCTTGGACAGTCGAA
TCTCTGGCCGAAGCGGCGGGCATGTCTCGCTCCGCATTCGCAGCGCGTTTTAAAGAGTTACTCGGACAAACACCGCTGGA
ATACGTAACCGAGTGGAGGATGCAGAAGGCGATGCAGTTACTGCAACAGCGTGACAAGAAGCTCATAGACGTTGCTCGGT
CGGTCGGTTACGAGTCCGGCGCTGCCTTCAGTAAGGCGTTCAAGCGAGTTGTCGGAATCAACCCTGGTGAATACCTCAAA
GGTGGTTTTGAAGGCCACGGTAATGCCGGAATGGCGGAAGATTCTTGA

Upstream 100 bases:

>100_bases
TGTCTATTCGTCTAAAAAATAGGGGCCTAAACGAGCTGTTTTGCACCTTTCAGGAGCTGGGACGCGCGGCTTCGGGGAGA
AAGGAGTGTAGGTCTTGTGA

Downstream 100 bases:

>100_bases
AGGGGAGGATTCCGACTTTGGCGGTGGGTCCTAGGTGCCATGGAAGTGTGTTCTTCCACTGAAATGGGTGCCCCAGGTGC
CTCGCATTTGGGAACACAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MEAQLDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAMLSRGNCWLSVGGIPDPIPLT
GGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAHHGGGGAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQA
RTLALHDTMRALSSEMAEQAPGSEIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVE
SLAEAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAFSKAFKRVVGINPGEYLK
GGFEGHGNAGMAEDS

Sequences:

>Translated_335_residues
MEAQLDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAMLSRGNCWLSVGGIPDPIPLT
GGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAHHGGGGAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQA
RTLALHDTMRALSSEMAEQAPGSEIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVE
SLAEAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAFSKAFKRVVGINPGEYLK
GGFEGHGNAGMAEDS
>Mature_335_residues
MEAQLDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAMLSRGNCWLSVGGIPDPIPLT
GGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAHHGGGGAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQA
RTLALHDTMRALSSEMAEQAPGSEIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVE
SLAEAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESGAAFSKAFKRVVGINPGEYLK
GGFEGHGNAGMAEDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=192, Percent_Identity=31.25, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082197, Length=135, Percent_Identity=34.0740740740741, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36476; Mature: 36476

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAQLDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LSRGNCWLSVGGIPDPIPLTGGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAH
HCCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCEEE
HGGGGAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQARTLALHDTMRALSSEMAEQA
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSEIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCHH
SLAEAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESG
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAFSKAFKRVVGINPGEYLKGGFEGHGNAGMAEDS
HHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEAQLDPITDIFRTMHVTAFGQHRLEATAPWGLMQEKRTEEKLTPSGQIDSPTDLAHYAM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LSRGNCWLSVGGIPDPIPLTGGDCFLVDRDTSIVMRDSPRTRPRSTFGEVAAKADGNVAH
HCCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCEEE
HGGGGAPTTIVCGSMSFDRASLRPITQLLPSFILIRAEQARTLALHDTMRALSSEMAEQA
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSEIVANRLAEVLFIQILRAHIASGPERNKGWLRAIFDPKMGTALSAIHDSVKTPWTVE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCHH
SLAEAAGMSRSAFAARFKELLGQTPLEYVTEWRMQKAMQLLQQRDKKLIDVARSVGYESG
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAFSKAFKRVVGINPGEYLKGGFEGHGNAGMAEDS
HHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]