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The map label for this gene is yjcR [C]

Identifier: 116623195

GI number: 116623195

Start: 5211585

End: 5212871

Strand: Reverse

Name: yjcR [C]

Synonym: Acid_4102

Alternate gene names: 116623195

Gene position: 5212871-5211585 (Counterclockwise)

Preceding gene: 116623196

Following gene: 116623194

Centisome position: 52.31

GC content: 63.33

Gene sequence:

>1287_bases
ATGAAGCTCCGCACCCTGATCGCCCTCATTTGCGTCCTCGGAATTCTCGGCGCCCTTGCCTGGGGCGCCATGCGCGTCGT
CCGTGCTACCACCGCCACTGCCGCGCTGGAACTCCCCACCACTAAGGTCAAACAAGGCCGGGTCACTCTCACCGTCGCCT
GCCGCGGAGAGCTGCAGGGCGGCAACTCCGAAATGCTCACCGCCCCCATGATCGGCTCTGACAGCATGGCCATCACCTCC
CTCCGCGAGCCCGGCGAACTCGTCGCCCCCGGCGACGTCGTCGTCCAGTTCGATACCACCGAGCAGGAGTTCCGCCTCAA
GGAGGCCGAAGCCGATCTCGCCGAAGCCGAGCAGCAGGTCATCAAGGCGGAAGCCGATTCCCAGGCCACCGATGAGGAAT
CCCACTACGCCATGCTCAGCGCGGAAGCCGACGTCAAAAGCGCCCGCATCGAGGTCCGCCGCAATCCCCTGATCGCCAGC
ATCGCCGCCCGCCAGAACGATCTCGCTCTCGAAGCCGCCGTCAACCGCCAGCGCCAGACCGCGCAGGATTACGCCAATAA
AAAGACCACCTCCGCCGCCGGCATCGCCATTCAAAAAGCCCAGGAAAATAAGGCGAGAGTCATGGCCGATATCGCCCGCA
AAAACATCGAGAACATGACCCTCAAGGCCAAGACCGGTGGCTATGTCAACGTCCAGCAGAACTCCAACCAGAACATGATC
TACTGGGGCATGCAGTTGCCGCCCTTCCAGTTGGGCGACACCGCGCGCGCCGGTATGGCTGTCGCGCAGATTCCAGACCT
CAATAGCTGGGAAGTCAGCGCCAACGTCGGCGAGCTCGATCGCGGCCACCTTACCATTGGCCAGCAGGTCACCATCAAGG
TCGTCGCCCTCGCCGGCAAGGAATTCGCCGGCAAAGTCAAAAATATCGGCGGAACGAGCGGCCCGCCTTGGGATCGACGC
TTCGAAGCGCGCATCGCGCTCGATCACGCAGCCCCCGAGCTGCGCCCCGGCATGACCTCCAATATGGTCATCACCGTGGA
CACGCTCGATAACGTACTCTGGATCCCCTCGCAGGCCCTCTTCGAAAGCGATGGCCGCAGCTTCATCTACGTCCGCGGGC
CCGCGGGCTTCGTCCCCCACGATGTCACTCTCGTTCGCCGCAGCGAAAGCCAGGCCGTCATTACCGGCGTCAAGGAAGGC
GAGATCGTCGCCATGTCGAACCCCGACCAGCAGCTCAAAACCGCCAGTCCCGAACAGAACGGCGCCATGAAGGCGCTCGC
AAAATGA

Upstream 100 bases:

>100_bases
TCGAGGTCCTCGCCCGCAACCCCGATGAAATCGCCGTCAAAGGCATCCCGGATGGCTCCATGGTGACCCTCATCGACCCG
GAAAAGAAGGACCAAAAGAA

Downstream 100 bases:

>100_bases
TCATCTTCTCAGACCTTGGTCAGGCCGTCGCCAACCTGCGCGCCCAGAAAACCCGCACTCTGCTCACCGCCCTCGGTATC
GTCTTTGGCGTCGGCAGCGT

Product: multidrug resistance efflux pump-like protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Membrane-Fusion Protein; RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Secretion Protein HlyD Family Protein; Membrane Permease Cation Efflux Pumps; Efflux Transporter Rnd Family Mfp Subunit; Membrane-Fusion Protein-Like Protein

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKLRTLIALICVLGILGALAWGAMRVVRATTATAALELPTTKVKQGRVTLTVACRGELQGGNSEMLTAPMIGSDSMAITS
LREPGELVAPGDVVVQFDTTEQEFRLKEAEADLAEAEQQVIKAEADSQATDEESHYAMLSAEADVKSARIEVRRNPLIAS
IAARQNDLALEAAVNRQRQTAQDYANKKTTSAAGIAIQKAQENKARVMADIARKNIENMTLKAKTGGYVNVQQNSNQNMI
YWGMQLPPFQLGDTARAGMAVAQIPDLNSWEVSANVGELDRGHLTIGQQVTIKVVALAGKEFAGKVKNIGGTSGPPWDRR
FEARIALDHAAPELRPGMTSNMVITVDTLDNVLWIPSQALFESDGRSFIYVRGPAGFVPHDVTLVRRSESQAVITGVKEG
EIVAMSNPDQQLKTASPEQNGAMKALAK

Sequences:

>Translated_428_residues
MKLRTLIALICVLGILGALAWGAMRVVRATTATAALELPTTKVKQGRVTLTVACRGELQGGNSEMLTAPMIGSDSMAITS
LREPGELVAPGDVVVQFDTTEQEFRLKEAEADLAEAEQQVIKAEADSQATDEESHYAMLSAEADVKSARIEVRRNPLIAS
IAARQNDLALEAAVNRQRQTAQDYANKKTTSAAGIAIQKAQENKARVMADIARKNIENMTLKAKTGGYVNVQQNSNQNMI
YWGMQLPPFQLGDTARAGMAVAQIPDLNSWEVSANVGELDRGHLTIGQQVTIKVVALAGKEFAGKVKNIGGTSGPPWDRR
FEARIALDHAAPELRPGMTSNMVITVDTLDNVLWIPSQALFESDGRSFIYVRGPAGFVPHDVTLVRRSESQAVITGVKEG
EIVAMSNPDQQLKTASPEQNGAMKALAK
>Mature_428_residues
MKLRTLIALICVLGILGALAWGAMRVVRATTATAALELPTTKVKQGRVTLTVACRGELQGGNSEMLTAPMIGSDSMAITS
LREPGELVAPGDVVVQFDTTEQEFRLKEAEADLAEAEQQVIKAEADSQATDEESHYAMLSAEADVKSARIEVRRNPLIAS
IAARQNDLALEAAVNRQRQTAQDYANKKTTSAAGIAIQKAQENKARVMADIARKNIENMTLKAKTGGYVNVQQNSNQNMI
YWGMQLPPFQLGDTARAGMAVAQIPDLNSWEVSANVGELDRGHLTIGQQVTIKVVALAGKEFAGKVKNIGGTSGPPWDRR
FEARIALDHAAPELRPGMTSNMVITVDTLDNVLWIPSQALFESDGRSFIYVRGPAGFVPHDVTLVRRSESQAVITGVKEG
EIVAMSNPDQQLKTASPEQNGAMKALAK

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46101; Mature: 46101

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRTLIALICVLGILGALAWGAMRVVRATTATAALELPTTKVKQGRVTLTVACRGELQG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEECCC
GNSEMLTAPMIGSDSMAITSLREPGELVAPGDVVVQFDTTEQEFRLKEAEADLAEAEQQV
CCCCEEEEEECCCCCEEEEECCCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
IKAEADSQATDEESHYAMLSAEADVKSARIEVRRNPLIASIAARQNDLALEAAVNRQRQT
HHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCEEHHHHHHHHHHH
AQDYANKKTTSAAGIAIQKAQENKARVMADIARKNIENMTLKAKTGGYVNVQQNSNQNMI
HHHHHCCCCCCHHCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEE
YWGMQLPPFQLGDTARAGMAVAQIPDLNSWEVSANVGELDRGHLTIGQQVTIKVVALAGK
EECCCCCCCCCCCCHHHCEEEEECCCCCCEEEECCCCCCCCCEEEECCEEEEEEEEECCC
EFAGKVKNIGGTSGPPWDRRFEARIALDHAAPELRPGMTSNMVITVDTLDNVLWIPSQAL
HHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEECCCHHH
FESDGRSFIYVRGPAGFVPHDVTLVRRSESQAVITGVKEGEIVAMSNPDQQLKTASPEQN
HCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEEEECCCCHHHHCCCCCCC
GAMKALAK
CCHHHHCC
>Mature Secondary Structure
MKLRTLIALICVLGILGALAWGAMRVVRATTATAALELPTTKVKQGRVTLTVACRGELQG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEECCC
GNSEMLTAPMIGSDSMAITSLREPGELVAPGDVVVQFDTTEQEFRLKEAEADLAEAEQQV
CCCCEEEEEECCCCCEEEEECCCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
IKAEADSQATDEESHYAMLSAEADVKSARIEVRRNPLIASIAARQNDLALEAAVNRQRQT
HHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCEEHHHHHHHHHHH
AQDYANKKTTSAAGIAIQKAQENKARVMADIARKNIENMTLKAKTGGYVNVQQNSNQNMI
HHHHHCCCCCCHHCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEE
YWGMQLPPFQLGDTARAGMAVAQIPDLNSWEVSANVGELDRGHLTIGQQVTIKVVALAGK
EECCCCCCCCCCCCHHHCEEEEECCCCCCEEEECCCCCCCCCEEEECCEEEEEEEEECCC
EFAGKVKNIGGTSGPPWDRRFEARIALDHAAPELRPGMTSNMVITVDTLDNVLWIPSQAL
HHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEECCCHHH
FESDGRSFIYVRGPAGFVPHDVTLVRRSESQAVITGVKEGEIVAMSNPDQQLKTASPEQN
HCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEEEECCCCHHHHCCCCCCC
GAMKALAK
CCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA