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The map label for this gene is pehX [H]

Identifier: 116623151

GI number: 116623151

Start: 5148803

End: 5150113

Strand: Reverse

Name: pehX [H]

Synonym: Acid_4057

Alternate gene names: 116623151

Gene position: 5150113-5148803 (Counterclockwise)

Preceding gene: 116623152

Following gene: 116623149

Centisome position: 51.68

GC content: 62.93

Gene sequence:

>1311_bases
ATGCGCGTCCTCCTGCTGCTCATCGCGGCTCTCGCGCTGCGCGCCGCGGAATTCCGCGTGACCGACTACGGCGCCAAGGC
CGACGGGAAGACGGTCAATACCGTGGCGCTGCAGAAGGCAATCGACGCCGCCGCCAAGGCCGGGAAGGGCGTCGTCGTCT
TCGCGCCTGGCGTGTACCTTTCTGGCGCGCTCTTCCTGAAATCGAACATGGAGCTGCGGCTCGATGAGGGCGTCGAAATC
CGCGGCGTCCAGGATCTCGCCGCCTACCCGCTCATGCAGACCCGCGTCGCCGGCATCGAAATGAAATGGCCGGCCGCGCT
CCTCAATGTCTACGAGCAGTCCAACGTGAGGCTCTCGGGCAAAGGCACGGTGGATGGCGACGGCAAAATCTGGTGGGACC
TGTATTGGAAGATGCGCCGCGAAGAGTACGAGCCCAAAGGCCTCCGCTGGGCCGTCGATTACGATTGCCGCCGCCCGCGC
CTGATTCAGATTTACAAATCGCAGGGCGTCGATCTCGTCAGTCTCACGCTCAAACGCCCCGGCTTCTGGACCGTCCACAT
CTGCTATTCCGAGCGTGTCACGGTGGATGGCCTCACCATTCGCAACAATACCGATGGCAAGGGCCCGAGCACAGACGGCA
TCGATATCGACTCCTCCTCCGACGTACTTGTGGCCCATTGCGACATCGACTGCAACGACGATGCCATTTGCCTCAAGGCG
GGCCGCGATGCCGATGGCCTGCGCGTCAACCTTCCCACCGAGAGAGTCAGGATCACGGATAATGTCGTGCGCGGCGGCGC
CGCCGGCGTCACCATCGGCAGCGAGACCTCGGGCGGGATTCGCCACATCGAAGTCGATCACCTGACGGTGATGAGCGCGG
TCCCCGCAGGCATTCTTTTCAAAAGCGCGAGCACCCGCGGGGGCACGATCGAGGACATCGCGATCCGCAACGTGATCACG
GTCGGCGTCGCGACGCCGGTCAGCATCACGCTCAATTGGAATCCCGCGTACAGCTACGCCAAGCTCCCCGAGGGCGTGAA
GGATATGCCGGATTACTGGCGCGTGCTCACGGAAGTCGTACCGCCCGGGAAGGGCATCCCGCATTTCCGCGATGTGCGCA
TCTCCCGCGTGAAATCCACCGGCGCGCAGCGCGCCTTCGCGGTCAGTTCTTACGCCGAGTCCCCGCTCGTCGATTTTCAG
TTCAAGGATATCGACATCGAAGCCAAGACCGCAGGCAGCATCGCCAACACGCAAGGCTGGAAGTTTGAGAACATGACGAT
CAAGACCGCCGACGGCACCACCGTGAAATAG

Upstream 100 bases:

>100_bases
GCGCGGACGGCGTGATTCTCTCGCGCAAATGGAGCGAGATGAAGAGCGCCAATCTCAAAGGCGCGGGTGCCGCGATCCGC
GAGTTGGGACTGGCCTGACA

Downstream 100 bases:

>100_bases
GCACGTTACTCGCCCAAAAACACGCGATCCAATTCCTTCGTCACTTCTTCCGGCATGGGCGCGAGGACGCCGATTCCCTG
GCTGTTGATGATCGCCTCGG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRVLLLLIAALALRAAEFRVTDYGAKADGKTVNTVALQKAIDAAAKAGKGVVVFAPGVYLSGALFLKSNMELRLDEGVEI
RGVQDLAAYPLMQTRVAGIEMKWPAALLNVYEQSNVRLSGKGTVDGDGKIWWDLYWKMRREEYEPKGLRWAVDYDCRRPR
LIQIYKSQGVDLVSLTLKRPGFWTVHICYSERVTVDGLTIRNNTDGKGPSTDGIDIDSSSDVLVAHCDIDCNDDAICLKA
GRDADGLRVNLPTERVRITDNVVRGGAAGVTIGSETSGGIRHIEVDHLTVMSAVPAGILFKSASTRGGTIEDIAIRNVIT
VGVATPVSITLNWNPAYSYAKLPEGVKDMPDYWRVLTEVVPPGKGIPHFRDVRISRVKSTGAQRAFAVSSYAESPLVDFQ
FKDIDIEAKTAGSIANTQGWKFENMTIKTADGTTVK

Sequences:

>Translated_436_residues
MRVLLLLIAALALRAAEFRVTDYGAKADGKTVNTVALQKAIDAAAKAGKGVVVFAPGVYLSGALFLKSNMELRLDEGVEI
RGVQDLAAYPLMQTRVAGIEMKWPAALLNVYEQSNVRLSGKGTVDGDGKIWWDLYWKMRREEYEPKGLRWAVDYDCRRPR
LIQIYKSQGVDLVSLTLKRPGFWTVHICYSERVTVDGLTIRNNTDGKGPSTDGIDIDSSSDVLVAHCDIDCNDDAICLKA
GRDADGLRVNLPTERVRITDNVVRGGAAGVTIGSETSGGIRHIEVDHLTVMSAVPAGILFKSASTRGGTIEDIAIRNVIT
VGVATPVSITLNWNPAYSYAKLPEGVKDMPDYWRVLTEVVPPGKGIPHFRDVRISRVKSTGAQRAFAVSSYAESPLVDFQ
FKDIDIEAKTAGSIANTQGWKFENMTIKTADGTTVK
>Mature_436_residues
MRVLLLLIAALALRAAEFRVTDYGAKADGKTVNTVALQKAIDAAAKAGKGVVVFAPGVYLSGALFLKSNMELRLDEGVEI
RGVQDLAAYPLMQTRVAGIEMKWPAALLNVYEQSNVRLSGKGTVDGDGKIWWDLYWKMRREEYEPKGLRWAVDYDCRRPR
LIQIYKSQGVDLVSLTLKRPGFWTVHICYSERVTVDGLTIRNNTDGKGPSTDGIDIDSSSDVLVAHCDIDCNDDAICLKA
GRDADGLRVNLPTERVRITDNVVRGGAAGVTIGSETSGGIRHIEVDHLTVMSAVPAGILFKSASTRGGTIEDIAIRNVIT
VGVATPVSITLNWNPAYSYAKLPEGVKDMPDYWRVLTEVVPPGKGIPHFRDVRISRVKSTGAQRAFAVSSYAESPLVDFQ
FKDIDIEAKTAGSIANTQGWKFENMTIKTADGTTVK

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 47549; Mature: 47549

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLLLIAALALRAAEFRVTDYGAKADGKTVNTVALQKAIDAAAKAGKGVVVFAPGVYL
CHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCEEEEEECCHHH
SGALFLKSNMELRLDEGVEIRGVQDLAAYPLMQTRVAGIEMKWPAALLNVYEQSNVRLSG
CEEEEEECCCEEEECCCEEEECCHHHHHCCHHHHHCCCEEEECHHHHHHHHHCCCEEEEC
KGTVDGDGKIWWDLYWKMRREEYEPKGLRWAVDYDCRRPRLIQIYKSQGVDLVSLTLKRP
CCEECCCCEEEEEEEHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCC
GFWTVHICYSERVTVDGLTIRNNTDGKGPSTDGIDIDSSSDVLVAHCDIDCNDDAICLKA
CEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCEEEEEC
GRDADGLRVNLPTERVRITDNVVRGGAAGVTIGSETSGGIRHIEVDHLTVMSAVPAGILF
CCCCCCEEEECCHHEEEEEHHHHCCCCCEEEECCCCCCCEEEEEECCEEEEHHCCCCEEE
KSASTRGGTIEDIAIRNVITVGVATPVSITLNWNPAYSYAKLPEGVKDMPDYWRVLTEVV
ECCCCCCCCCHHEEEEEEEEEEECCCEEEEEECCCCCCHHHCCCCHHCCHHHHHHHHHHC
PPGKGIPHFRDVRISRVKSTGAQRAFAVSSYAESPLVDFQFKDIDIEAKTAGSIANTQGW
CCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCE
KFENMTIKTADGTTVK
EEECEEEEECCCCCCC
>Mature Secondary Structure
MRVLLLLIAALALRAAEFRVTDYGAKADGKTVNTVALQKAIDAAAKAGKGVVVFAPGVYL
CHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCEEEEEECCHHH
SGALFLKSNMELRLDEGVEIRGVQDLAAYPLMQTRVAGIEMKWPAALLNVYEQSNVRLSG
CEEEEEECCCEEEECCCEEEECCHHHHHCCHHHHHCCCEEEECHHHHHHHHHCCCEEEEC
KGTVDGDGKIWWDLYWKMRREEYEPKGLRWAVDYDCRRPRLIQIYKSQGVDLVSLTLKRP
CCEECCCCEEEEEEEHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCC
GFWTVHICYSERVTVDGLTIRNNTDGKGPSTDGIDIDSSSDVLVAHCDIDCNDDAICLKA
CEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCEEEEEC
GRDADGLRVNLPTERVRITDNVVRGGAAGVTIGSETSGGIRHIEVDHLTVMSAVPAGILF
CCCCCCEEEECCHHEEEEEHHHHCCCCCEEEECCCCCCCEEEEEECCEEEEHHCCCCEEE
KSASTRGGTIEDIAIRNVITVGVATPVSITLNWNPAYSYAKLPEGVKDMPDYWRVLTEVV
ECCCCCCCCCHHEEEEEEEEEEECCCEEEEEECCCCCCHHHCCCCHHCCHHHHHHHHHHC
PPGKGIPHFRDVRISRVKSTGAQRAFAVSSYAESPLVDFQFKDIDIEAKTAGSIANTQGW
CCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCE
KFENMTIKTADGTTVK
EEECEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]