Click here to switch to the map view.

The map label for this gene is ogl [H]

Identifier: 116623149

GI number: 116623149

Start: 5145976

End: 5147232

Strand: Reverse

Name: ogl [H]

Synonym: Acid_4055

Alternate gene names: 116623149

Gene position: 5147232-5145976 (Counterclockwise)

Preceding gene: 116623151

Following gene: 116623148

Centisome position: 51.65

GC content: 61.02

Gene sequence:

>1257_bases
ATGCTTTCACTAGCGTGCCGCGTCGCTCTGGTGGCTGCGGCGGCTGTTATCACCCGGGCGGCCGAACCGCCCAAATCCTG
GATCGACCCGGACACGGGTCATCGCATCGTCCGCCTCACTGACGAGCCGAATTCGGCCAGCCTCTACTTCAACCAGAACG
GCTACACGGCCGACGGCAAGCAAATGGTCTACACCACGCCCGAAGGCATCAGCGTGTTGAACCTGGAGACCCATGCCGCG
AAGCCGGTTGTGAAGGGGCCGGCGCAGGTGATCGTCACCGGCCACAAGACAAACAGCGTCTTTTACCGTAAGGGCACCGA
GATCTTCGCTACCAATGTCGATACGCTCGAGACGCGCCGCATCGCGCAGCTGCCGCGGCGCGGGTCGGTGGCCACCGTGA
ATGCCGACGAAACTCTGTTGGGCGGTACGTACATCGAAGGCGACGGCCAGGATTTCGCCGGACGCAATCCTCCCCCGGGA
CAGTCCGCCCCAGCCGCGGCCGGAGGTCAGATTCACCCGTTGGAGCAGGCGCTCAACAAAGGGCAGATGATGGAGCAGCG
CCTGGCCGCGCATCTGCCTATGGCGATGTTCACGATCAATACCGCGACCGGCGAGGTCAAGGTAATCCATCGCGCCACCG
ATTGGTTGAACCATTTGGAATTCTCGCCCACCGATCCCAACCTCCTGATGTTCTGCCATGAGGGCCCGTGGCACAAGGTG
GATCGCATCTGGACCATCCGCACGGATAACGGCGAGATCAAGCAGATTCACCACCGCACCATGGCCGGCGAGATCTTCGG
GCACGAATTCTGGAGCCACGACGGAAAGACCATCTGGTACGACCTGCAGACTCCGCGCGGCGAGGATTTCTGGCTCGCGG
GATACAACGTGGAAACCGCCGAGCGCACCTGGTATCACCTGCAGCGCGACGAATGGTCGATTCACTTCAACGTCACGCTG
GATGGCAAACTATTCTGCGGCGACGGCGGGGATCCGGGCCAGGTGGCGAAGGCCAGGAACGGGCAATGGATTTACCTGTT
CCACCCGAAGAAGATCGTCTTCCAGGGCGAGCTGAATGAGAAGGATTTCGTGCAGCCCGGCGTCTTTCAAGCCGAGAAGC
TGGTCAACATGTCGAAACACAATTACCGCCTGGAGCCCAATGTGAGCTTCACGCCGGACCAGAAGTGGGTGGTCTTCCGA
TCCAACATGTTCGGCGCGACTTACGCGTTCGCCGTCGAGGTCGAAAAGAGCAGATGA

Upstream 100 bases:

>100_bases
TGCAACGCGGCATCCTCTTGGCGTTCTGCATGATAAAACGCCTAGCTCTCCCCCAAAAAGGTTTGACGCGTCGCGCCGTA
CGTGATCAAGATGGGGAATT

Downstream 100 bases:

>100_bases
AACTGGCCGTATGTCTGCTGTGGAGCGCCGCGCTTGCGGCCGCTCCGCGCCTGACCATTCCGTTCGACACGGACTGGCGT
TTTTCCCACGGCGACGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MLSLACRVALVAAAAVITRAAEPPKSWIDPDTGHRIVRLTDEPNSASLYFNQNGYTADGKQMVYTTPEGISVLNLETHAA
KPVVKGPAQVIVTGHKTNSVFYRKGTEIFATNVDTLETRRIAQLPRRGSVATVNADETLLGGTYIEGDGQDFAGRNPPPG
QSAPAAAGGQIHPLEQALNKGQMMEQRLAAHLPMAMFTINTATGEVKVIHRATDWLNHLEFSPTDPNLLMFCHEGPWHKV
DRIWTIRTDNGEIKQIHHRTMAGEIFGHEFWSHDGKTIWYDLQTPRGEDFWLAGYNVETAERTWYHLQRDEWSIHFNVTL
DGKLFCGDGGDPGQVAKARNGQWIYLFHPKKIVFQGELNEKDFVQPGVFQAEKLVNMSKHNYRLEPNVSFTPDQKWVVFR
SNMFGATYAFAVEVEKSR

Sequences:

>Translated_418_residues
MLSLACRVALVAAAAVITRAAEPPKSWIDPDTGHRIVRLTDEPNSASLYFNQNGYTADGKQMVYTTPEGISVLNLETHAA
KPVVKGPAQVIVTGHKTNSVFYRKGTEIFATNVDTLETRRIAQLPRRGSVATVNADETLLGGTYIEGDGQDFAGRNPPPG
QSAPAAAGGQIHPLEQALNKGQMMEQRLAAHLPMAMFTINTATGEVKVIHRATDWLNHLEFSPTDPNLLMFCHEGPWHKV
DRIWTIRTDNGEIKQIHHRTMAGEIFGHEFWSHDGKTIWYDLQTPRGEDFWLAGYNVETAERTWYHLQRDEWSIHFNVTL
DGKLFCGDGGDPGQVAKARNGQWIYLFHPKKIVFQGELNEKDFVQPGVFQAEKLVNMSKHNYRLEPNVSFTPDQKWVVFR
SNMFGATYAFAVEVEKSR
>Mature_418_residues
MLSLACRVALVAAAAVITRAAEPPKSWIDPDTGHRIVRLTDEPNSASLYFNQNGYTADGKQMVYTTPEGISVLNLETHAA
KPVVKGPAQVIVTGHKTNSVFYRKGTEIFATNVDTLETRRIAQLPRRGSVATVNADETLLGGTYIEGDGQDFAGRNPPPG
QSAPAAAGGQIHPLEQALNKGQMMEQRLAAHLPMAMFTINTATGEVKVIHRATDWLNHLEFSPTDPNLLMFCHEGPWHKV
DRIWTIRTDNGEIKQIHHRTMAGEIFGHEFWSHDGKTIWYDLQTPRGEDFWLAGYNVETAERTWYHLQRDEWSIHFNVTL
DGKLFCGDGGDPGQVAKARNGQWIYLFHPKKIVFQGELNEKDFVQPGVFQAEKLVNMSKHNYRLEPNVSFTPDQKWVVFR
SNMFGATYAFAVEVEKSR

Specific function: Involved in degradation of pectin, which causes soft-rod disease in plants [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40 [H]

EC number: =4.2.2.6 [H]

Molecular weight: Translated: 46912; Mature: 46912

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLACRVALVAAAAVITRAAEPPKSWIDPDTGHRIVRLTDEPNSASLYFNQNGYTADGK
CCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCC
QMVYTTPEGISVLNLETHAAKPVVKGPAQVIVTGHKTNSVFYRKGTEIFATNVDTLETRR
EEEEECCCCCEEEEECHHCCCCEECCCEEEEEEECCCCEEEEECCCEEEEECCCHHHHHH
IAQLPRRGSVATVNADETLLGGTYIEGDGQDFAGRNPPPGQSAPAAAGGQIHPLEQALNK
HHHCCCCCCEEEECCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
GQMMEQRLAAHLPMAMFTINTATGEVKVIHRATDWLNHLEFSPTDPNLLMFCHEGPWHKV
HHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHHHCCCCCCCCCEEEEEECCCCCCC
DRIWTIRTDNGEIKQIHHRTMAGEIFGHEFWSHDGKTIWYDLQTPRGEDFWLAGYNVETA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCC
ERTWYHLQRDEWSIHFNVTLDGKLFCGDGGDPGQVAKARNGQWIYLFHPKKIVFQGELNE
CCEEEEEECCCEEEEEEEEECCEEEECCCCCCCHHHHCCCCCEEEEECCCEEEEEECCCC
KDFVQPGVFQAEKLVNMSKHNYRLEPNVSFTPDQKWVVFRSNMFGATYAFAVEVEKSR
CCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MLSLACRVALVAAAAVITRAAEPPKSWIDPDTGHRIVRLTDEPNSASLYFNQNGYTADGK
CCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCC
QMVYTTPEGISVLNLETHAAKPVVKGPAQVIVTGHKTNSVFYRKGTEIFATNVDTLETRR
EEEEECCCCCEEEEECHHCCCCEECCCEEEEEEECCCCEEEEECCCEEEEECCCHHHHHH
IAQLPRRGSVATVNADETLLGGTYIEGDGQDFAGRNPPPGQSAPAAAGGQIHPLEQALNK
HHHCCCCCCEEEECCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
GQMMEQRLAAHLPMAMFTINTATGEVKVIHRATDWLNHLEFSPTDPNLLMFCHEGPWHKV
HHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHHHCCCCCCCCCEEEEEECCCCCCC
DRIWTIRTDNGEIKQIHHRTMAGEIFGHEFWSHDGKTIWYDLQTPRGEDFWLAGYNVETA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCC
ERTWYHLQRDEWSIHFNVTLDGKLFCGDGGDPGQVAKARNGQWIYLFHPKKIVFQGELNE
CCEEEEEECCCEEEEEEEEECCEEEECCCCCCCHHHHCCCCCEEEEECCCEEEEEECCCC
KDFVQPGVFQAEKLVNMSKHNYRLEPNVSFTPDQKWVVFRSNMFGATYAFAVEVEKSR
CCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA