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The map label for this gene is yrbE [H]

Identifier: 116623002

GI number: 116623002

Start: 4937532

End: 4938614

Strand: Reverse

Name: yrbE [H]

Synonym: Acid_3906

Alternate gene names: 116623002

Gene position: 4938614-4937532 (Counterclockwise)

Preceding gene: 116623006

Following gene: 116623001

Centisome position: 49.56

GC content: 64.45

Gene sequence:

>1083_bases
ATGGGCCTACAATCGTCTACGATGCTGAAAACAATCAGCCGGCGTGGTCTGTTCGCCGGTGCCCTGGCGGGGGCCTTGAC
GGCCCAAACAAGGAAGGTTCGGGTGGGGCTCTCGGGCTTTGACGGGCATCCCGAGGAGATACTTCGGGTTCTGCCGGAGT
CGCCTTGGATCGAACTGGCGGCGGTGGCGGACGATGGCTCCGACCCGGTCGCGCGGGTGCAGGGGCTGAAGAATCCCTTC
GCCGCAAAGGCAACGCATTACGATGCGCTGGAGGACATGCTGGCGCACGAGAAGCTCGACGTGGTGGCGGTTTGCAACAA
CGATGGGCGGCGGGCGGGAGCGATCCGGGCGTGTGCGGCGCGCAAGATCGATGTGATCGCGGAGAAGCCGCTGGCGTTAA
CTCGCGCGGATCTGGACGCGGTGTATGGAGCGGTGAAGCAGAGCGGGATCCGGCTCGGGATGCTGCTGCCGATGCGGTTC
GATCCGCCGTACCTGGCGATGCGCAAGATCGTGGCCGCCGGAGAGATCGGCGAAGTGATCGAGATGGATTCGCAGAAGAG
CTATCAGCTGGGAGCGCGACCGGAGTGGCAGAAGCACGCCGCGACGTATGGCAGCACGATTTTGTGGATCGCGATCCACG
GGATCGATTTGATGTTGTTCGTGAGCGGACGGCGATTCACGGAGGCGGCCTCAATGCAGGCGCGCGTGGGGTTCCCGGAG
ATTGGCGATATGGAGAATGTGACGGCGAGTATTTTCCGGATGGACAATGGCGGGGCGGCCAGCCTGCATATGGATTATCT
GCGGCCGGAGAGCGCCGGGGGGCATGGCGACGACCGGCTGCGCATCGCGGGATCGCTGGGGGTGGTGGAGTATCAGGAGT
CCACGGGGGTGACGCTGCTGAAGAAGGGGGCGGCGCCGTGGACAATCCGCGATTTGCCGCCGAAGGGGTCGGTGTTTTTG
GATTTTCTGAATGGCTCGCGAGGGCTGACGTGGGGGGAGATTGTGGCGGCGAATGAGGCGACGCTGGCGGCGCATGTGGC
GGCGGGGTCGAAGGGCTGGGTGAGGATCGGTAACGGCGGGTAA

Upstream 100 bases:

>100_bases
CTTGCGGTCGCGGCTCTGATGGGGGTTGTGCGGTTCGAGGAAGGCTCGGCGCTCCCTTACTTTACGGTCGCGGCTCGTTC
CCTGCGGTGCAGAGAGTGGA

Downstream 100 bases:

>100_bases
GGGCGTGAACGGAGACGCCGATTGAAAGCCGGCTGCACGGTCGAAAACCCCACGGCGAACAACGGAATACTCCTCGAAAA
GCGCGGCGTAGCTGACGAGC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MGLQSSTMLKTISRRGLFAGALAGALTAQTRKVRVGLSGFDGHPEEILRVLPESPWIELAAVADDGSDPVARVQGLKNPF
AAKATHYDALEDMLAHEKLDVVAVCNNDGRRAGAIRACAARKIDVIAEKPLALTRADLDAVYGAVKQSGIRLGMLLPMRF
DPPYLAMRKIVAAGEIGEVIEMDSQKSYQLGARPEWQKHAATYGSTILWIAIHGIDLMLFVSGRRFTEAASMQARVGFPE
IGDMENVTASIFRMDNGGAASLHMDYLRPESAGGHGDDRLRIAGSLGVVEYQESTGVTLLKKGAAPWTIRDLPPKGSVFL
DFLNGSRGLTWGEIVAANEATLAAHVAAGSKGWVRIGNGG

Sequences:

>Translated_360_residues
MGLQSSTMLKTISRRGLFAGALAGALTAQTRKVRVGLSGFDGHPEEILRVLPESPWIELAAVADDGSDPVARVQGLKNPF
AAKATHYDALEDMLAHEKLDVVAVCNNDGRRAGAIRACAARKIDVIAEKPLALTRADLDAVYGAVKQSGIRLGMLLPMRF
DPPYLAMRKIVAAGEIGEVIEMDSQKSYQLGARPEWQKHAATYGSTILWIAIHGIDLMLFVSGRRFTEAASMQARVGFPE
IGDMENVTASIFRMDNGGAASLHMDYLRPESAGGHGDDRLRIAGSLGVVEYQESTGVTLLKKGAAPWTIRDLPPKGSVFL
DFLNGSRGLTWGEIVAANEATLAAHVAAGSKGWVRIGNGG
>Mature_359_residues
GLQSSTMLKTISRRGLFAGALAGALTAQTRKVRVGLSGFDGHPEEILRVLPESPWIELAAVADDGSDPVARVQGLKNPFA
AKATHYDALEDMLAHEKLDVVAVCNNDGRRAGAIRACAARKIDVIAEKPLALTRADLDAVYGAVKQSGIRLGMLLPMRFD
PPYLAMRKIVAAGEIGEVIEMDSQKSYQLGARPEWQKHAATYGSTILWIAIHGIDLMLFVSGRRFTEAASMQARVGFPEI
GDMENVTASIFRMDNGGAASLHMDYLRPESAGGHGDDRLRIAGSLGVVEYQESTGVTLLKKGAAPWTIRDLPPKGSVFLD
FLNGSRGLTWGEIVAANEATLAAHVAAGSKGWVRIGNGG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38474; Mature: 38342

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLQSSTMLKTISRRGLFAGALAGALTAQTRKVRVGLSGFDGHPEEILRVLPESPWIELA
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEE
AVADDGSDPVARVQGLKNPFAAKATHYDALEDMLAHEKLDVVAVCNNDGRRAGAIRACAA
EEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
RKIDVIAEKPLALTRADLDAVYGAVKQSGIRLGMLLPMRFDPPYLAMRKIVAAGEIGEVI
CCEEEEECCCCEEHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCCCHHH
EMDSQKSYQLGARPEWQKHAATYGSTILWIAIHGIDLMLFVSGRRFTEAASMQARVGFPE
CCCCCCCEECCCCCCHHHHHHHCCCEEEEEEEECEEEEEEECCCCHHHHHCCCEECCCCC
IGDMENVTASIFRMDNGGAASLHMDYLRPESAGGHGDDRLRIAGSLGVVEYQESTGVTLL
CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEE
KKGAAPWTIRDLPPKGSVFLDFLNGSRGLTWGEIVAANEATLAAHVAAGSKGWVRIGNGG
ECCCCCEEEECCCCCCCEEEEEECCCCCCCHHHEEECCCCEEEEEEECCCCCEEEECCCC
>Mature Secondary Structure 
GLQSSTMLKTISRRGLFAGALAGALTAQTRKVRVGLSGFDGHPEEILRVLPESPWIELA
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEE
AVADDGSDPVARVQGLKNPFAAKATHYDALEDMLAHEKLDVVAVCNNDGRRAGAIRACAA
EEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
RKIDVIAEKPLALTRADLDAVYGAVKQSGIRLGMLLPMRFDPPYLAMRKIVAAGEIGEVI
CCEEEEECCCCEEHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCCCHHH
EMDSQKSYQLGARPEWQKHAATYGSTILWIAIHGIDLMLFVSGRRFTEAASMQARVGFPE
CCCCCCCEECCCCCCHHHHHHHCCCEEEEEEEECEEEEEEECCCCHHHHHCCCEECCCCC
IGDMENVTASIFRMDNGGAASLHMDYLRPESAGGHGDDRLRIAGSLGVVEYQESTGVTLL
CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEE
KKGAAPWTIRDLPPKGSVFLDFLNGSRGLTWGEIVAANEATLAAHVAAGSKGWVRIGNGG
ECCCCCEEEECCCCCCCEEEEEECCCCCCCHHHEEECCCCEEEEEEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]