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The map label for this gene is xerD [C]

Identifier: 116622416

GI number: 116622416

Start: 4190599

End: 4191597

Strand: Direct

Name: xerD [C]

Synonym: Acid_3312

Alternate gene names: 116622416

Gene position: 4190599-4191597 (Clockwise)

Preceding gene: 116622415

Following gene: 116622418

Centisome position: 42.05

GC content: 60.76

Gene sequence:

>999_bases
ATGCGGGATCCCGCTAATCTTGCTGCCTTGCTGCAGTCTTTCTTCACCACGCGTTTGATGGCGCAGCGGAAAGTCAGCCC
CCATACCATCGCCTCGTATCGCGATACGTTCCGCCTGCTGTTGCAGTTCGCTCAAAAGCGGCTGCGCAAAGCCCCCTCTC
AGTTGGGACTGGACGATCTGGATGCCTCTCTCGTCGGGGCGTTCCTGGAAGACCTGGAGAACCGCCGTCACAATGGCGCC
AGAAGTCGGAACCTGCGTTTGACGGCCATCCGATCGTTTTTCCGCTATGCATCACTGGAAGCGCCGGCGCATAGTGGAAT
CATCCAACGAGTGCTGGCGATTCCGAACCAACGACAGCGGCGCGCATTGGTGGGCTTTCTGACCCGGCCCGAGATCGAGG
CGCTGCTGGCGGCGCCGAATCGCACGCAGTGGCTGGGACGTCGTGACCATGCCTTTCTGCTCACCGCCGTTCAGACCGGC
CTACGATTATCCGAAATGACCGGGTTGCGCCAGGAGGATGTCTCGCTCGGAGCCGGCGCACATGTGCGTTGCCGGGGAAA
AGGACGCAAGGAACGCTGTACGCCTTTGGCCAAGCCCACAGCCGCGGTCTTGAAAGCTTGGATTCGGGAGCAAGGGAGGG
GAGATTCCAAGACGCTGTTTCCCAGTACCCGCGGCGGACCCTTGAGTGCCGATGGTGTTCAGCATTTGCTCGCACGCCAC
GTGGCGCAGGCGCGGAAACACTGCGCATCGCTGCGCAAGAAACGGGTTTCGCCACACGTGCTTCGGCACGCCGCAGCCAT
GGAGTTGCTACAGGGTGGCGTGGACCGAGCCGTGATCGCCCTTTGGCTCGGCCATGAGTCCGTCGAAACCACCCAGATCT
ACCTCGACGCCGACCTTGCGTTGAAAGAAGAGGCCTTGGCCAAGACCAATCCAGTCAAAGGGGCTCCCAAACGCTTTCAA
CCGGACGACGAGTTGCTGGCTTTCCTCAAACAACTCTAA

Upstream 100 bases:

>100_bases
GGGCATGCCCACGTAACCGATACCTATTGGTATCTGACCGGCACTCCCGAACTGTTGGGAGCGGCCAATAAGCGGCTGGA
GAAACGGTGGGAGGCCTTGA

Downstream 100 bases:

>100_bases
TCCCAAGCGTCCGGACTATGCCGCGTGGCGAATGATGGTGTCCAACCAGACCTCATATTCTGAGGGCCTCGAACCACTTC
GTTCTGATCCTCGCGGCATA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGAPKRFQ
PDDELLAFLKQL

Sequences:

>Translated_332_residues
MRDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGAPKRFQ
PDDELLAFLKQL
>Mature_332_residues
MRDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRQEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGAPKRFQ
PDDELLAFLKQL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=34.4709897610922, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1790244, Length=291, Percent_Identity=29.2096219931272, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790767, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36989; Mature: 36989

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDL
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHH
DASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
RALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGA
HHHHHHHCCCHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCC
HVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
EEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEECCHH
LKEEALAKTNPVKGAPKRFQPDDELLAFLKQL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MRDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDL
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHH
DASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
RALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGA
HHHHHHHCCCHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCC
HVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
EEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEECCHH
LKEEALAKTNPVKGAPKRFQPDDELLAFLKQL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]